KEGG   Halobacterium sp. DL1: HALDL1_00625
Entry
HALDL1_00625      CDS       T03878                                 
Name
(GenBank) transcription initiation factor IIB
  KO
K03124  transcription initiation factor TFIIB
Organism
hdl  Halobacterium sp. DL1
Pathway
hdl03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:hdl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    HALDL1_00625
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hdl03021]
    HALDL1_00625
Transcription machinery [BR:hdl03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     HALDL1_00625
 Prokaryotic type
  Archaeal type
    TFB
     HALDL1_00625
SSDB
Motif
Pfam: TFIIB TF_Zn_Ribbon RB_B DZR_2 PHF5 zf-Mss51 zf-ribbon_3 RPA43_OB zinc-ribbons_6
Other DBs
NCBI-ProteinID: AHG05543
Position
unnamed:complement(133096..134019)
AA seq 307 aa
MAIRDIYETCFDENVQTKSNNQCPECDGRVTTNSVETVCEDCGLVIEESRIDQGPEWRAY
DEDQRKRTGAPLTAARHDRGLSTEIGRWKDANGNELSGQKRQRLSRMRREQNRGRFQSKA
ERNLAHGLGEVRRLASALELSDSVRDQACQLFRSAQTEDLLRGRSIEAIAAASVYGACRC
NRLSRLLDEVSEMARVEESRVANAYKTLNEELGLPAESVSPSMFVPRLASDLECPDAIRQ
RARTLAEQAEELGVTTGVHPAGFAAACLYKAAREEGRWLTQTEAADVANASTATVRTHRD
TLAEQVA
NT seq 924 nt   +upstreamnt  +downstreamnt
atggcaattagagatatctacgaaacttgcttcgacgaaaatgtccagacaaagtcaaac
aaccaatgccccgaatgtgacggacgtgtaactacgaactcggtcgaaacggtctgtgag
gattgtggcctggtcatcgaggaaagtcgaatcgaccagggaccagagtggcgagcgtac
gacgaggaccagcgaaagcggacgggtgctccacttacagcggcacggcatgaccgaggg
ctgtcgaccgagattggtcgctggaaagatgcaaacgggaacgaactctctgggcaaaag
cgccagcgactgtcccgaatgcgccgggaacagaatcgtggtcggttccagtcgaaagcc
gagcgaaacctcgcacacggattgggcgaggtccggcggctggcgagtgccctcgagctc
tccgattcggtgcgcgaccaggcgtgtcagctgttccggagcgctcaaactgaagacctg
cttcgaggcagatccatcgaagccatcgccgcggccagcgtgtacggggcctgccgctgt
aataggctctcccggttgctggacgaggtcagcgagatggcccgcgtcgaggaatctcga
gtcgcgaacgcgtacaaaacgctgaacgaagagctgggcctccctgccgagtccgtctcc
cccagtatgttcgtaccgcggctcgcgtcggacctcgagtgtccggatgcaattcggcag
cgggcccgaacgctcgctgagcaggctgaagagctcggtgtgacgaccggtgtgcatccg
gcagggttcgcagcggcctgcctctacaaggccgctcgcgaggaaggccgatggctgact
caaaccgaggctgcggacgtggcgaacgcctcgacggcgaccgtccggacgcatcgagat
acgttagcggagcaggtggcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (16)   

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