KEGG   Halobacterium sp. DL1: HALDL1_04080
Entry
HALDL1_04080      CDS       T03878                                 
Name
(GenBank) replication protein A
  KO
K07466  replication factor A1
Organism
hdl  Halobacterium sp. DL1
Pathway
hdl03030  DNA replication
hdl03420  Nucleotide excision repair
hdl03430  Mismatch repair
hdl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hdl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HALDL1_04080
   03420 Nucleotide excision repair
    HALDL1_04080
   03430 Mismatch repair
    HALDL1_04080
   03440 Homologous recombination
    HALDL1_04080
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:hdl03000]
    HALDL1_04080
   03032 DNA replication proteins [BR:hdl03032]
    HALDL1_04080
   03400 DNA repair and recombination proteins [BR:hdl03400]
    HALDL1_04080
Transcription factors [BR:hdl03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    HALDL1_04080
DNA replication proteins [BR:hdl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    HALDL1_04080
DNA repair and recombination proteins [BR:hdl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     HALDL1_04080
   MMR (mismatch excision repair)
     HALDL1_04080
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     HALDL1_04080
SSDB
Motif
Pfam: tRNA_anti-codon REPA_OB_2 CDC24_OB3 Ssb-like_OB SSB POT1PC
Other DBs
NCBI-ProteinID: AHG02883
Position
500802..502223
AA seq 473 aa
MGDTEDIYEDLDTDVSLEEFREAVESKVEQMGGLADEETAAMLIAHELDDGEVNGIADIE
VEMDEVKFLAKVTSVGDVRTFERDDEENPEGRVVNVEVADETGSVRISLWDEQAAAATDE
LDVGQVLRIKGRPKDGYNGVEVSVDQMEVDDDEEIDVQVQDEYAVGDLSLGISDVNLTGE
ILATESVRTFDRDDGSEGSVSNLVVGDETGRVRVTLWDDQADRATELDAGEVVEVVDGYV
RERDGSLELHVGDRGAVEVVDEDVAYEPDSTPIDALELDDSADIAGVIRSADPKRTFDRD
DGSEGQVRNVRLQDDSGDIRVALWGEKADLDIGPGDEVAFVDVDVQDGWQDDIEASAGWG
STVIPLADGAATDTDDGGDGATGLSAFGSGGSDGGSDDEDASSTASAASDGGAVAEGEDV
EFTGVVVQAQDPVILDDGEETMSVETDADVTLGQELTVRGSLRDGRLRAEELR
NT seq 1422 nt   +upstreamnt  +downstreamnt
atgggcgacactgaggacatctacgaggacctcgacaccgacgtcagcctggaggagttc
cgggaggccgtcgagtcgaaggtcgagcagatgggcgggctggccgacgaggagacggcc
gccatgctcatcgcccacgaactcgacgacggcgaggtcaacggcatcgccgacatcgag
gtggagatggacgaggtgaagttcctcgcgaaggtgacgagcgtcggcgacgtgcggacc
ttcgagcgcgacgacgaggagaacccggagggccgcgtggtgaacgtcgaggtcgcggac
gagacgggcagcgtccgcatctcgctgtgggacgagcaggccgcggccgccaccgacgaa
ctcgacgtcgggcaggtgctccgcatcaagggccggccgaaggacggctacaacggcgtc
gaggtgagcgtcgaccagatggaggtcgacgacgacgaggagatcgacgtccaggtccag
gacgagtacgccgtcggcgacctctcgctgggcatctctgacgtgaacctcaccggcgag
attctcgccaccgagagcgtgcggacgttcgaccgcgacgacggcagcgaggggagtgtg
tcgaacctcgtggtcggcgacgagaccggccgcgtccgcgtgacgctgtgggacgaccag
gccgaccgcgcgaccgaacttgacgcgggcgaggtcgtggaagtcgtcgacggctacgtg
cgggagcgtgacggcagcctcgaactccacgtcggcgaccgcggcgccgtcgaggtcgtc
gacgaggacgtcgcctacgaaccggactcgacacccatcgacgcgctggaactcgacgac
tccgcggacatcgcgggcgtgatccgctcggcggaccccaagcgcacgttcgaccgcgac
gacggcagcgagggccaggtccggaacgtccgcctgcaggacgactcgggagacatccgg
gtcgcgctctggggggagaaggccgacctcgacatcggccccggcgacgaggtggcgttc
gtcgacgtggacgtccaggacggctggcaggacgacatcgaggcgtcggccggctggggg
tcgacggtcatcccgctcgcggacggcgccgccacggacaccgacgacggtggcgacggg
gccaccggactgtcggcgttcggcagtggtggctcggacggcggtagcgacgacgaagat
gcgagttcgacagcgagcgccgcgagtgacggcggcgcggtcgccgagggcgaggacgtg
gagttcacgggcgtcgtcgtgcaggcccaggacccggtgattctggacgacggcgaggag
acgatgagcgtggagacggacgccgacgtgaccctcggccaggaactgacagtccgcggg
tcgcttcgggacggccgcctccgcgccgaagaactgcggtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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