KEGG   Hyphomicrobium denitrificans ATCC 51888: Hden_0252
Entry
Hden_0252         CDS       T01265                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
hdn  Hyphomicrobium denitrificans ATCC 51888
Pathway
hdn03030  DNA replication
hdn03410  Base excision repair
hdn03420  Nucleotide excision repair
hdn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hdn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Hden_0252
   03410 Base excision repair
    Hden_0252
   03420 Nucleotide excision repair
    Hden_0252
   03430 Mismatch repair
    Hden_0252
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hdn03032]
    Hden_0252
   03400 DNA repair and recombination proteins [BR:hdn03400]
    Hden_0252
Enzymes [BR:hdn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Hden_0252
DNA replication proteins [BR:hdn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Hden_0252
DNA repair and recombination proteins [BR:hdn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Hden_0252
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Hden_0252
   MMR (mismatch excision repair)
    DNA ligase
     Hden_0252
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Hden_0252
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT 5_3_exonuc Lar_restr_allev
Other DBs
NCBI-ProteinID: ADJ22077
UniProt: D8JQS5
Position
256309..258447
AA seq 712 aa
MAKKTQKRSSGSVRPASPGATSVEDEIARLSAEIERHDELYYRNDAPEISDADYDALRRR
LTQLEDAHPELKRAGSPSEKVGSAPVAAFGKIAHDVPMLSLGNAFDDQDVVDFVQRVRRF
LNLGESDELEITAEPKIDGLSISIRYEGGRLVQAATRGDGAEGENVTANVKTIKDIPHLL
VGKDVPDVIDIRGEIYLGHKDFEKLNAAQAASGGKVFANPRNAAAGSLRQLDSSITAQRP
LQFFAYAWGAASKLPSDTQRGVVAAFKSWGLPVNPLMEITRSPDELLDYYRGIESKRAKL
DYDIDGVVYKVNRLDYQERLGFVSRSPRWAIAHKFAAERATTVLNKIDIQVGRTGALTPV
AKLEPVTVGGVVVSNATLHNEDEISRKDIREGDTVVVQRAGDVIPQIVEVVLDKRPQHAA
PYKFPAVCPICGSHAVRESDEEGNAADVVRRCTGGLVCGAQLKERLKHFVSRNAFDIEGL
GGEKIEFFFETGRIKSAADIFTLEKRDQKSDEPLTKVRGFKETSVNKLFAAINARRTVPL
DRFLFALGIRHIGETTAKDLAKAYGTFEALRAAVDAAIQGGKGSEAYQDIDNIEGIGETV
VDALIDFFSEQHNQEQLDALLKEVNVTAFKRVQVSSPVTGKTVVFTGTLTKLTRNEAKAQ
AERLGAKVSGSVSKKTDYVVAGAEAGSKLDNARALGVIVLDEDGWLELIGKA
NT seq 2139 nt   +upstreamnt  +downstreamnt
atggctaagaaaacgcaaaagcgctcttctggatcggtgcgtccggcttctccgggcgcg
acaagcgttgaagacgaaatcgcccggctgtcggcggaaatcgaacgccacgatgagctc
tactaccgtaacgatgcacccgaaatttcggatgccgactacgatgcgttgcgccgccgt
ctcacccagctggaagacgctcatcccgagctgaagcgtgccggaagtccgagtgagaaa
gtcggttccgcgccggtcgcggcgttcggcaagatcgcgcacgacgtgccgatgctgtcg
ctcggcaatgccttcgacgatcaggacgtcgtcgatttcgtgcagcgcgttcgccgcttt
ctaaatctcggcgagagcgatgagctcgaaatcacggccgagccgaagatcgacgggctt
tcgatttcgatccgctacgaaggcggtcggctcgtgcaggctgcgacgcgcggagatggc
gccgagggtgagaacgtcacggccaacgtcaagacgatcaaggacatcccgcaccttctc
gtcggcaaggatgttccggacgtcatcgatatccgcggcgagatttatctcgggcacaag
gattttgaaaagctcaacgcggcgcaggctgcgagtggcggcaaggttttcgccaacccg
cgaaacgcggctgcgggatctttgcggcaattggattcgtcgatcacggcacagcggccg
ttgcagttcttcgcgtatgcgtggggcgcggcttcgaagcttccgtcagatacgcagcgc
ggcgtcgtcgcagcgttcaagtcttgggggctgccggtcaacccgctgatggagatcacg
cgaagcccggatgagcttctcgattattatcgcgggatcgagagcaagcgcgccaagctc
gactacgacatcgacggtgttgtctacaaggtcaaccgcctcgactatcaagagcggctc
gggttcgtgtcgcgctcgccgcgctgggcgatcgcgcataaatttgcggccgaacgggcg
acgacggttctgaacaagatcgatatccaagtcggccgcacgggtgcgctgacgccggtc
gcgaaactggagccggtgaccgtcggcggcgtcgtcgtctcgaacgcgacgctgcataac
gaagacgagatttcgcgcaaggacattcgcgaaggcgacacggtcgtcgtacagcgcgcc
ggcgacgtcattccgcagatcgtcgaggtcgtgctcgacaagcggccgcagcacgccgcg
ccttataaatttcctgcggtctgtccgatatgcggcagccacgcggtgcgcgagtccgat
gaagagggaaacgcagcggacgtcgttcgccgctgcaccggcggcctcgtgtgcggcgcg
cagctgaaagagcgcctgaagcatttcgtttcgcgcaacgctttcgacatcgaaggactt
ggcggcgagaagatcgagtttttctttgagaccggacgcatcaaatcggcggctgacatt
ttcacgctcgagaagcgcgatcaaaaatccgatgagccgctgacgaaggttcgcggcttc
aaggagacctcggtcaacaagctgttcgcggccatcaacgcgcggcggaccgtgccgctc
gaccgctttctgttcgcgctcggcatccgtcacatcggcgagacgacggcgaaggatctc
gccaaggcatacgggacgttcgaagcgttgcgtgcagcggtcgatgccgccatccaaggc
ggcaagggcagcgaagcctatcaggatatcgacaacatcgaaggcatcggtgagacggtc
gtcgatgcgttgatcgactttttcagcgagcagcacaaccaggagcagctcgatgcgctg
ctgaaggaagtgaacgtcacggcgttcaagcgcgtgcaggtctcgtcgccggtgacgggc
aagacggtggttttcaccggcacgctgaccaaactgacgcgcaacgaggcgaaggcgcag
gccgagcgtttgggcgcgaaggtgtcgggttccgtctcgaagaaaacagactacgtcgtt
gctggcgcggaagccgggtcgaaactcgacaacgcgcgtgcgctcggcgtcatcgtcctc
gacgaggacggatggcttgagctgatcgggaaagcctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (77)   
   KEGG ORTHOLOGY (1)   
   RefGene (74)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (103)   

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