KEGG   Hyphomicrobium denitrificans ATCC 51888: Hden_1010
Entry
Hden_1010         CDS       T01265                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
hdn  Hyphomicrobium denitrificans ATCC 51888
Pathway
hdn03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hdn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Hden_1010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hdn03021]
    Hden_1010
   03400 DNA repair and recombination proteins [BR:hdn03400]
    Hden_1010
Enzymes [BR:hdn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Hden_1010
Transcription machinery [BR:hdn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Hden_1010
DNA repair and recombination proteins [BR:hdn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Hden_1010
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: ADJ22824
UniProt: D8JV08
Position
1062575..1066726
AA seq 1383 aa
MAQTLTSRKRLRKQFGSIGEVAEMPNLIEVQKASYDDFLMVKEPPGGRSDDFGLQSVFKG
VFPISDFAGKSTLEFVSYEFEPPKFDTDECMQRDMTYAAPLKVKLRLIVFDINEETGSKS
IKDVKEQDVYMGDMPLMTLNGTFIINGTERVIVSQMHRSPGVFFDHDRGKTHSSGKLLFA
ARIIPYRGSWLDFEFDAKDIVYVRIDRRRKLPVTTMLYALGLDDEQILAHFYKHIPIKES
KRGWKMPYIPEKFRGITPQSDIADAKTGEVIARQGEKITARRARELAESGVKEILISAED
LAGRFIAEDIVDLETGKIFAEAGDELDANLLAELKEQKVKEFHILDIDYVNVGAFIRNTL
NIDKNANQQEALMDIYRVMRPGEPPTIEAATALFHGLFFDPERFDLSAVGRVKMNMRLEL
DAPDTMRVLRREDILAVVKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLRM
ERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS
ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPY
RKVINGRVTNEVVYLSAMEEMRHHVAQANAEIDAKGKMTEDLVTIRHNGDVTLVPTDKVD
YIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLIKAEAPLVGTGMEERVAHD
SGAAIAARRTGIVDQVDATRIVIRATEEQDPSKPGVDIYRLRKFQRSNQNTCINQRPLIN
VGDHVHAGDIIADGPSTELGELALGKNVLVAFMPWMGYNFEDSILMNERVVSEDVFTSIH
IEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKGE
SPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVFNRHGVEKDERAMAIEREE
IERLAKDRDDELQILDRNVYARLKDALMGKEVAKGPKGARKGTTIDTAILDDIPRSQWWE
IGLANEKAQAEVEAIQKQYEDAKKGLGLRFADKVDKLQRGDELPPGVMKMVKVFVAVKRK
IQPGDKMAGRHGNKGVVSMIVPSEDMPFLEDGTPVDVVLNPLGVPSRMNVGQILETHMGW
ACRGLGRLIDDALHQFHESGQAKALRDQMAKVYGDEIKPTMKDDELVGIAENLRNGVPIA
TPVFDGAREKDIVEMLQLAGFDTSGQVTLFDGRSGEPFDRKVTVGYKYVLKLHHLVDDKI
HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK
VYEAIVRGDDAFEAGVPESFNVLVKEMRALGLNVELVNSEAQPPEVEEAEPEAPQAQLPP
AAE
NT seq 4152 nt   +upstreamnt  +downstreamnt
atggctcaaaccctcacaagccgcaaacgcctccgcaagcagtttggttcgatcggcgaa
gtcgctgagatgccgaatctcattgaggttcagaaagcatcctatgacgactttctgatg
gtcaaggaacctccgggcggcaggtcggatgatttcggcttgcagtcggttttcaagggc
gtgtttccgatttcggatttcgccggcaagtcgaccctcgaatttgtcagctatgagttc
gaaccgccgaagttcgacaccgacgagtgcatgcagcgcgacatgacgtatgcggcgccg
ctcaaggtgaagctgcgcctcatcgtgtttgatatcaacgaagagacgggctccaagtcg
atcaaggacgtcaaggagcaggacgtctacatgggcgacatgccgctcatgacgctgaac
ggcaccttcatcatcaacggcaccgagcgcgtgatcgtctcgcagatgcaccggtcgccg
ggcgtcttcttcgaccacgatcgcggcaagacgcactcgtccggcaagctgttgttcgcg
gctcgcatcattccgtatcgcggttcgtggctcgacttcgagttcgacgccaaggatatc
gtctacgtgcgcatcgaccgtcgccgcaaactgccggtgacgacgatgctgtatgcgctg
ggcctcgacgacgagcagatcctcgcgcacttctacaagcacatcccgatcaaggaatcg
aagcgcggctggaagatgccgtacattccggagaagttccggggcatcacaccgcagtcg
gacatcgccgatgcgaagacgggcgaagtcatcgcgcgccagggtgagaagatcacggcg
cggcgtgcgcgtgagcttgccgaaagcggcgtcaaggaaatcctgatctcggcggaagat
ctcgccgggcgcttcatcgcggaagacatcgtcgatctcgagaccggcaagatcttcgcg
gaagcgggcgatgagctcgacgccaacctgctcgccgaactcaaggagcagaaggtcaag
gaattccatatcctcgacatcgactacgtcaacgtcggcgcgttcatccgcaatacgctg
aacatcgacaagaacgccaatcagcaggaagcgctgatggacatctaccgggtcatgcgc
ccgggcgagccgccgacgatcgaagcggcgaccgcgctgttccacggcctgttcttcgac
ccggagcggttcgacctctcggcggttggccgggtgaagatgaacatgcgcctcgaactc
gacgcgccggacacgatgcgcgtgctccgcagggaagacatccttgcggtcgtgaagacg
cttgtcgatctccgcgacggcaagggcgagatcgacgacatcgaccatctcggcaaccgc
cgtgtgcgttcggtcggcgagctgatggaaaatcagtatcgcgtcggcctgctgcgcatg
gagcgcgccatcaaggagcgcatgtcgtcggtcgatatcgacacagtgatgccgcaggat
ctgatcaacgcgaagccggccgccgctgccgtgcgcgagttcttcggttcctcgcagctt
tcgcagttcatggaccagacgaacccgctgtcggaaatcacccacaagcgccgtctttcg
gcacttggaccgggcggtctgacgcgtgagcgcgcgggcttcgaagtccgcgacgtgcat
ccgacgcactacggccgcatctgcccgatcgagacgcctgaaggcccgaacatcggcctt
atcaactcgctcgcgacgttcgcgcgcgtcaacaagtacggcttcatcgagagcccgtat
cgcaaggtcatcaacggccgcgtgacgaacgaggtcgtctatctttccgccatggaagag
atgcgccatcacgttgcgcaggcgaacgccgagatcgacgccaaaggcaagatgacggaa
gacctcgtcaccatccgccacaacggcgacgtgacgctcgtcccgacggacaaggtcgat
tacatcgacgtgtcgccgaagcagctcgtgtcggtcgccgcggcgttgattccgttcctc
gagaacgacgacgccaaccgcgcgctgatgggctcgaacatgcagcgtcaggccgtgccg
ctgatcaaggcggaagcgccgctggtcggcaccggcatggaagagcgcgtcgcgcatgac
tcgggcgccgcgatcgctgcgcgccggaccggcatcgtcgatcaggtcgatgcgacgcgt
atcgttatccgcgcgacggaagagcaggatccctcgaagccgggcgtcgacatctatcgt
ctgcgcaagttccagcgctcgaaccagaacacctgcatcaaccagcggccgctgatcaac
gtcggcgaccatgtgcatgcgggcgacatcatcgccgacggtccgtcgaccgaactcggc
gagctggcgctcggcaagaacgtgctcgtcgcgttcatgccgtggatgggctacaacttc
gaagactcgatcctgatgaacgagcgcgtcgtctcggaggacgtgttcacctcgattcac
atcgaggaattcgaggtgatggcgcgcgacacgaagctcgggcctgaggaaatcacgcgc
gatattccgaacgtctcggaagaagcgctgaagaaccttgacgaagccggcatcgtctac
atcggcgccgaagtgcatccgggcgacattctcgtcggcaagatcacgccgaagggcgag
agcccgatgacgccggaagaaaagcttctccgcgccatcttcggcgagaaggcgtccgac
gttcgcgatacgtcgctgcgtctgccgccgggcgtcgccggaacgatcgtcgaagtgcgc
gtcttcaaccgtcacggcgtcgagaaagacgagcgtgcgatggcgatcgagcgcgaggaa
atcgaacgcctcgccaaggaccgcgacgacgagctgcagattctcgaccgcaacgtctac
gcacgtctcaaagacgcgctgatgggcaaggaagtcgccaagggtccgaagggcgctcgc
aagggcaccacgatcgacaccgcgatcctcgacgacattccgcgcagccagtggtgggaa
atcggtctcgcgaacgaaaaggcgcaggctgaagtcgaagccattcagaagcagtacgaa
gacgcgaagaagggtctcggcctgcgcttcgccgacaaggtcgacaagctgcagcgtggc
gacgagctgcctccgggcgtcatgaagatggtcaaagtcttcgtcgccgtgaagcgcaag
atccagccgggcgacaagatggccggccgtcacggcaacaagggcgtcgtgtcgatgatc
gttccgtcggaagacatgccgttcctcgaggacggcacgccggtcgacgtcgttctgaat
ccgctcggcgtgccgagccgcatgaacgtcggacagatcctcgaaacgcacatgggctgg
gcttgccgcggtctcggccgcctgatcgacgacgcattgcatcagttccacgagagtggg
caggcgaaggcgttgcgcgatcaaatggcgaaggtctacggcgacgagatcaagccgacg
atgaaggacgatgaactcgtcggtatcgccgaaaacctgcgcaatggtgttcccatcgcg
acgccggtgttcgatggcgcgcgcgaaaaggatatcgtcgagatgctgcagcttgcaggt
ttcgacacgtcaggtcaggtgacgctcttcgacggtcgctccggcgagccgttcgatcgg
aaagttaccgtcggctacaagtacgttctgaagctgcaccatcttgtcgacgacaagatc
cacgcacgttcgatcgggccgtactcgctcgtcacgcagcagccgctcggtggcaaggcg
cagttcggcggtcagcgtttcggcgaaatggaggtctgggcgctcgaagcgtacggtgcc
gcctacacgctgcaggaaatgctgacggtgaagtcggacgacgtcgcgggccgtaccaag
gtctacgaagcgatcgttcgcggcgacgatgccttcgaagccggcgttccggaaagcttc
aacgtgctcgtcaaggaaatgcgtgcgctcggcctcaacgtcgagctcgtcaacagcgaa
gcgcagcctccggaagtggaagaagccgaaccggaagcgcctcaggcacagctgccgccg
gcagccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (43)   

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