KEGG   Hyphomicrobium denitrificans ATCC 51888: Hden_2178
Entry
Hden_2178         CDS       T01265                                 
Name
(GenBank) DNA gyrase, A subunit
  KO
K02469  DNA gyrase subunit A [EC:5.6.2.2]
Organism
hdn  Hyphomicrobium denitrificans ATCC 51888
Brite
KEGG Orthology (KO) [BR:hdn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hdn03032]
    Hden_2178
   03400 DNA repair and recombination proteins [BR:hdn03400]
    Hden_2178
Enzymes [BR:hdn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     Hden_2178
DNA replication proteins [BR:hdn03032]
 Prokaryotic type
  DNA Topoisomerases
   Hden_2178
DNA repair and recombination proteins [BR:hdn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Hden_2178
SSDB
Motif
Pfam: DNA_topoisoIV DNA_gyraseA_C
Other DBs
NCBI-ProteinID: ADJ23976
UniProt: D8JQM2
Position
complement(2235102..2237849)
AA seq 915 aa
MTDNSDDERPAGREPSDIRPVSISDEMKKSYLDYAMSVIISRALPDVRDGLKPVHRRILF
AMNELGLDWNKKYVKSARIVGEVMGKYHPHGNLAIYDALVRLAQDFSMRVPLVDGQGNFG
SIDGDPPAAERYTESRLAKVASFLLDDLDNDTVDYRDNYDGTIQEPSVLPAKFPNLLVNG
AGGIAVGMATNIPPHNLGEVIDACIADLDNPEIGIDELSQIIQGPDFPTAGLILGRGGIL
SAYHKGRGSIIMRARVTVEHIRKDREALVVSEIPYQVNKRTLIEKIADLVRDKKIEGISD
LWDESNREGIRIVIELKRDAVADVVLNNLYKYSDLQTTFGANMLAINGGRPESLTLKDFI
SAFTSFRQDVVTRRIKHLLNKARDRAHVLVGLAIAVANIDEVIKLIRFSASPAEAKEQLM
ARDWPAKDMVPLIELIADPRHKVSATGTYRLSEEQAKAILELRLARLTALGRDEIADELN
KIANEIREYLAILASRARVVDIVKGELQTIKDEFATPRKTEIVDIEGEVEDEDLIQREDC
VVTVSHKGYIKRVPLATYRAQRRGGKGRSGMSTRDEDFVTQLFVTSTHTPVLFFSSRGMC
YRMKVWRLPPASPQSPGKALVNLLPLAQDEVITSILPLPEDSSTWSELELIFATRSGNVR
RNALADFESINRNGKIAMKLDEGDSIVQVAIAKPDQDVLLTSGNGQCVRFLISDEIRLFK
GRDSTGVRGIRLGDGDEVISMAILDHFEASAEERAAYLKQASALRRSEETEDAEPVAEAD
AEEVSAEAVTLSPERFAVMQAGEQFVLTVSSKGFGKRSSSFEFRTSGRGGKGIVAMVVND
RNGRLLASFPIDEKDQIMLVTDGGQLIRCPVDGVRIAGRNTQGVRIFKTEAEEKVVSVER
ITEDETDEGSEGVSP
NT seq 2748 nt   +upstreamnt  +downstreamnt
ttgaccgacaatagcgacgacgaaagaccggctggccgcgagccgagcgacatccgcccc
gtctccatttcagacgagatgaagaagtcgtacctcgactacgcgatgagcgtcatcatc
tcgcgcgcgttgcccgatgtccgcgacggtctgaagcccgtgcaccgccgcatcctgttc
gcgatgaacgaactcgggctcgattggaataagaagtacgtcaagtcggcgcgcatcgtc
ggcgaggtgatgggcaaatatcacccgcacggcaacctcgcgatctacgacgcgctcgtg
cgtctcgcgcaggatttctcgatgcgcgtgccgctcgtcgatgggcagggcaacttcggt
tcgatcgacggtgacccgccggcggctgagcgctacacggaatcgcgtctcgccaaagtc
gcgagcttcctgctcgacgatctcgacaacgatacggtcgattatcgcgacaactacgac
ggcaccattcaggagccgtccgttctgcccgccaaatttccgaacctgctcgtcaacggt
gcgggcggcatcgcggtcggcatggcgacgaacattccgccgcacaacctcggcgaggtc
atcgacgcctgcatcgccgacctcgacaatcccgagatcggtatcgacgagctttcgcag
atcattcagggcccggatttcccgacggccggtctcattctcggccgcggcggcattctc
tcagcctatcacaagggccgcggctcgatcatcatgcgtgcccgcgtgaccgtcgagcat
atccgcaaggatcgcgaagccctcgtcgtctccgaaattccctatcaggtgaacaagcgc
acgctgatcgaaaaaatcgccgatctcgtgcgcgacaagaagatcgaaggcatctccgat
ctttgggatgaatcgaaccgcgaaggcattcgcatcgtcatcgagctgaagcgtgatgcg
gtcgccgatgtcgttctgaataacctctacaagtattccgacctgcagacgacgttcggc
gccaacatgctggcgatcaacggcggccgtccggaaagcctgacgctgaaggatttcatc
tcggcgttcacgagcttccgccaggacgtcgttacgcgccgcatcaagcacctgctgaac
aaggcgcgcgatcgcgctcacgtgttggtcggcttggcgatcgccgtcgccaacatcgac
gaggtgatcaagctcatccgcttttccgcgtcgcccgccgaagccaaagagcagctgatg
gcgcgcgactggccggcgaaagatatggtgccgctgatcgagctgatcgccgatccgcgc
cacaaggtgtcggcgaccggcacgtaccggctttcggaagagcaggcgaaggctatcctc
gaactgcgacttgcccgcctcacggctctcggccgcgacgagatcgctgacgagttgaac
aagatcgccaatgaaatccgcgaatatcttgcaatccttgcgtcgcgcgcgcgtgtcgtc
gatatcgtcaagggcgagctgcagacgatcaaggatgagttcgcgacgccgcgcaaaacc
gaaatcgtcgacatcgaaggcgaggtcgaagacgaggatcttatccagcgcgaggattgc
gtcgtcaccgtcagccataagggctacatcaagcgcgtgccgctcgcgacgtatcgcgcg
cagcgtcgtggcggcaagggccgctccggcatgtcgacgcgcgacgaggatttcgtcacg
cagctgttcgtgacgtcgacacatacgccggtgctgttcttctcgtcgcgcggcatgtgc
tatcgcatgaaagtctggcgcttgccgccggcttcgccgcaatcgcccggcaaggcgctc
gtcaacctgctgccgctcgcgcaggacgaggtcatcacgtcgatcctgccgctgccggag
gattcctcgacgtggagcgagcttgagctgatcttcgcgacacgttccggcaacgtccgg
cgcaacgcgctcgccgacttcgagagcatcaatcgcaacggcaagatcgcgatgaagctc
gatgaaggcgacagcattgtgcaggtcgcgatcgccaagcccgatcaggacgtgcttttg
accagcggtaacggccagtgcgtccgcttcctcatcagcgatgaaatccgcctgttcaag
gggcgcgactcgaccggcgttcgcggcatcaggctcggcgacggcgacgaagtcatctcg
atggccatcctcgatcacttcgaggcgtcagcagaggaacgcgccgcctacctgaagcag
gcgagcgctctgcgtcgctcggaagaaaccgaagacgccgaacccgtcgcggaggccgac
gccgaggaagtcagcgccgaggccgtgacgctcagtcccgaacgcttcgccgtgatgcag
gcgggcgagcaattcgtgctgaccgtttcgagcaagggcttcggcaaacgatcgtcgtcg
ttcgagttccgcacgtcgggtcgcggcggcaagggcatcgtcgcgatggtcgtcaacgat
cgcaacggccgtttgctcgcgtccttcccgatcgacgagaaggatcagatcatgctcgtc
accgacggcggccagctgatccgttgtcccgtggacggcgtccggatcgcgggccgcaac
acccagggcgtgcgcatcttcaagacggaagccgaggagaaggtcgtctccgtcgagcgt
atcaccgaggatgagacggacgagggcagcgaaggcgtcagcccataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (23)   

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