KEGG   Hyphomicrobium denitrificans 1NES1: HYPDE_39643
Entry
HYPDE_39643       CDS       T02646                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
hdt  Hyphomicrobium denitrificans 1NES1
Brite
KEGG Orthology (KO) [BR:hdt00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:hdt03016]
    HYPDE_39643
Enzymes [BR:hdt01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     HYPDE_39643
Transfer RNA biogenesis [BR:hdt03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    HYPDE_39643
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS
Other DBs
NCBI-ProteinID: AGK59597
UniProt: N0BBH2
Position
3390723..3391295
AA seq 190 aa
MPRLFTAIEIPDDIRDELHRLRMPLPGARWIAPESYHITLRFAGDIDNAKAREFAANLAN
IETDGFELRISGLGAFGGDDPHAIWAGVEPEAKLEDLARAHEKAARNAGLAPETRAFRPH
VTLARLKHSNAEAVARFLTRYGGYRSESFFVARTLLMSSRPSVGGGPYGIEDRFPVRGME
FLSEDGEASW
NT seq 573 nt   +upstreamnt  +downstreamnt
atgcctcgactattcaccgccatcgagatccccgacgacattcgagacgagcttcaccgt
ctgcgcatgccactgccgggcgcccggtggatcgcgcctgagagctatcacatcacgctc
agattcgcgggcgatatcgataacgcaaaagcgcgcgagtttgccgccaatctcgccaac
atagaaaccgatggcttcgagcttcgcatttccgggctcggtgcattcggcggcgacgat
ccgcacgcgatctgggcgggtgtcgagccggaggcgaaactcgaagatctcgcgcgcgcg
catgaaaaggctgcacgaaatgccggcctagcgcccgaaacgcgtgctttccgtccgcat
gtgacgctggcacgcctgaaacattcgaacgccgaagccgtcgcgcggtttttgacgcgt
tacggcgggtatcggtctgagtccttcttcgtggcgcgtacactgttgatgtcgtcgcgg
ccgagcgtcggaggcggcccctatggaatcgaagatcggtttcccgtgcgcggcatggaa
ttcctcagcgaggacggcgaagcaagctggtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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