KEGG   Herbiconiux sp. SALV-R1: HL652_01100
Entry
HL652_01100       CDS       T06594                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
hea  Herbiconiux sp. SALV-R1
Pathway
hea03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hea00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HL652_01100 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hea03021]
    HL652_01100 (rpoC)
   03400 DNA repair and recombination proteins [BR:hea03400]
    HL652_01100 (rpoC)
Enzymes [BR:hea01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HL652_01100 (rpoC)
Transcription machinery [BR:hea03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HL652_01100 (rpoC)
DNA repair and recombination proteins [BR:hea03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HL652_01100 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 DUF1690
Other DBs
NCBI-ProteinID: QJU52384
UniProt: A0A6M5IUV4
Position
212638..216516
AA seq 1292 aa
MLDVTTFDELRIGLATADDIRKWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMIISVDEDGRHEDMPGLENELRLEIKTLADQRDARIADRLGRLEAD
LAELEAEGAKADQKRRTKDGAEKEMSQTRKAYDEQISQLERVWEDFRNLKVGELKPEDAI
FHELQDRYGMYFEAYMGAEAIKKRLEAFDLEAESETLHLQIAEGKGQKKIRAIKRLRVVN
SFLQTGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTVKEGATGEGR
AFSTVSEAILAKDQGTLDLNAWVKIRMSDVHFAEGDAPEGYEGGPVLVETTLGRALFNEA
LPEDYPFVQQVADKGTISAIVNDLAERYPKVEVAASLDRIKDAGFYWATRSGVTVALSDI
LTPPTKREIVAGYEKQAAKVQAQFEKGLTTDLERRQELIQIWTKATDEVAAAMRANFPVD
NTINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYFIATHGA
RKGLADTALRTADSGYLTRRLVDVSQDVIIRETDCGTSRGLDLPIALEGADGVWTRDDNV
ENSVYARSLAADAVNEQGEVVAEAGDDVGDVLIDKLVAAGVRTIKVRSVLTCESAVGVCA
TCYGRSLATGNLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQEL
FEARTPKGASPIVEAAGRVVIEDTDRSRKVILTPDNGDEPIAYPVLKRATLLVEDGQHVE
LGQQLIVGAVDPKEVLRVKGVREVQKHLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVT
VVEHGDTDLLPGELVDRSRYTEVNRAALSEGKRPASARQEVMGITKASLATESWLSAASF
QETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLQKYRNVTVEATEEAKAERYPNR
IFTDDSVFSEADLSFVDFDSFSSDDYTPGTYN
NT seq 3879 nt   +upstreamnt  +downstreamnt
ttgctcgacgtaacaacttttgatgagctgcggatcggtctcgcgacggcagacgacatc
cgcaagtggtcgcacggtgaggtcaagaagcccgagaccatcaactaccgcacgctgaag
cccgagaaggacggcctcttcggagagcagatcttcgggccgagccgtgactgggagtgt
tcctgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgcgagcgctgcggtgtc
gaggtcacgaagtcgtcggtgcgccgtgagcgcatgggccacatcgagctcgccgctccg
gtcacgcacatctggtacttcaagggtgtgccgagccgcctcggctacctgctcgacatg
gcgccgaaagacctcgagaaggtcatctacttcgccgcgtacatgatcatctcggtcgac
gaagacggccgtcacgaagacatgcccggccttgagaacgagctgcggctcgagatcaag
accctggcagaccagcgtgacgcccgcatcgccgaccgcctgggccggctcgaggccgac
ctggccgagctcgaggccgagggtgccaaggccgaccagaagcgccgcacgaaggatggc
gccgagaaggagatgtcgcagacccgcaaggcctacgacgagcagatctcccagctcgag
cgcgtctgggaggacttccgcaacctcaaggtgggtgagctgaagcccgaagacgccatc
ttccacgagctgcaggaccgctacggcatgtacttcgaggcctacatgggcgcggaggcc
atcaagaagcgtctcgaggcgttcgacctcgaggccgagtcggagaccctgcacctgcag
atcgccgagggcaagggtcagaagaagatccgcgccatcaagcgtctgcgcgtggtgaac
tccttcctgcagaccggcaactcgccggccgcgatggtgctcgacgtcgttccggtcatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccgcttcgcgaccagtgacctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgtctccgtcgactgctcgacctc
ggtgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggaagccgtcgacgcc
ctgttcgacaacggccgccgtggtcgccccgtcacgggtaccggcaaccgcgccctgaag
tccctgagcgacatgctcaagggaaagcagggtcgcttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcatcgtcggtccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaagccgttcgtcatcaagcgcctg
atcgacctgagccacgctcagaacatcaaggccgcgaagcgcatggtggagcgcagccgt
ccgcaggtgtgggacgtgctcgaggagatcatccgcgagcgccccgtgctgctgaaccgt
gcaccgacgctccaccgtctcggcatccaggccttcgagcctcagctcgtggagggcaag
gcgatccagctgcacccgctcgtctgcgcggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctcccgctgtcggtggaggcccaggccgaggcgcgcatcctgatgctc
gcgtcgaacaacatcctgaagccgtccgacggccgcccggtgaccctgccgacgcaggac
atgatcatcggtctgcaccacctcaccacggtgaaggagggtgcgaccggcgagggccgt
gcgttctcgacggtgtcggaggccatcctggcgaaggaccagggcaccctcgacctgaac
gcctgggtcaagatccgcatgtccgacgtgcacttcgccgagggcgacgcccccgagggc
tacgagggcggtcccgtcctggtggagaccaccctcggtcgcgcgctcttcaacgaggcg
ctcccggaggactaccccttcgtgcagcaggtggccgacaagggcaccatctcggcgatc
gtcaacgacctcgccgagcgctacccgaaggtggaggtcgccgcctcgctcgaccgcatc
aaggacgccggcttctactgggccacccgctcgggtgtcaccgtggcgctcagcgacatc
ctcacgcctcccacgaagcgcgagatcgtcgccggctacgagaagcaggccgccaaggtg
caggcgcagttcgagaagggtctgacgaccgacctcgagcgtcgccaggagctcatccag
atctggacgaaggccaccgacgaggtcgccgcagccatgcgcgcgaacttcccggtcgac
aacacgatcaaccgcatggtcacctcgggtgcacgtggtaactggctgcaggtgcgcaac
atcgccggtatgcgaggcctcgtgaacaacccgaagggtgagatcatcccccgtccgatc
atctcctcgtaccgcgagggattgtcggtggcggagtacttcatcgcgacccacggtgct
cgtaagggcctcgccgacacggctctccgtacggccgactccggttacctcacgcgtcgt
ctcgtcgacgtctcgcaggatgtcatcatccgcgagaccgactgcggcacctcgcgtggt
ctcgacctgccgatcgccctcgagggcgccgacggcgtctggacccgcgacgacaacgtc
gagaactcggtgtacgcccggtcgctggctgcggatgcggtcaacgagcagggcgaggtc
gtcgccgaagccggtgacgacgtgggcgacgtgctgatcgacaagctggtggccgcgggt
gtccgcaccatcaaggtgcgctccgtgctcacctgcgagtcggctgtcggcgtctgcgcg
acctgctacggccggtcgctggccaccggaaacctcgtggacatcggagaggccgtcggc
atcatcgcggcccagtcgatcggagagcccggaacccagctcacgatgcgcaccttccac
acgggtggctcggcctcggccgacgacatcacgcagggtcttccccgcgtgcaggagctc
ttcgaggcccgtaccccgaagggtgcgtcgcccatcgtcgaggccgccggtcgcgtcgtg
atcgaagacaccgaccgcagccgcaaggtgatcctcacgcccgacaacggcgacgagccg
atcgcctacccggtgctgaagcgtgcgaccctcctcgtcgaggacgggcagcacgtcgag
ctcggtcagcagctcatcgtcggcgccgtcgacccgaaggaggtcctccgggtcaagggc
gtgcgcgaggtgcagaagcacctcgtgggcggtgtgcagggcgtctaccgttcgcagggt
gtgccgatccacgacaagcacatcgaggtcatcgtgcgccagatgctgcgcaaggtcacc
gtcgtcgagcacggcgacaccgacctgctgcccggtgagctcgtcgaccggtcgcgctac
accgaggtcaaccgcgccgccctctccgagggcaagcggcccgcctcggcccgtcaggag
gtcatgggtatcaccaaggcgtccctcgcgaccgagtcgtggctgtcggccgcgtcgttc
caggagaccacgcgtgttctcacgcaggccgccatggagggcaagtccgacccgctggtg
ggcctgaaggagaacgtgatcatcggaaagctgatcccggccggtaccggtctccagaag
taccgcaacgtcaccgtcgaggcgaccgaagaggccaaggccgagcgctacccgaaccgc
atcttcacagatgactcggtgttctcggaggccgacctctcgttcgtcgacttcgacagc
ttctcgagcgacgactacaccccgggcacctacaactag

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