KEGG T01910: HPF16

Helicobacter pylori F16: HPF16_0905

Entry

HPF16_0905        CDS       T01910

Symbol

truD

Name

(GenBank) tRNA pseudouridine synthase D

K06176

tRNA pseudouridine13 synthase [EC:5.4.99.27]

Organism

hef Helicobacter pylori F16

Brite

KEGG Orthology (KO) [BR:hef00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:hef03016]
    HPF16_0905 (truD)
Enzymes [BR:hef01000]
5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.27  tRNA pseudouridine13 synthase
     HPF16_0905 (truD)
Transfer RNA biogenesis [BR:hef03016]
Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    HPF16_0905 (truD)
Prokaryotic type
    HPF16_0905 (truD)

SSDB

Motif

Pfam:

TruD GutM

Other DBs

NCBI-ProteinID:

BAJ55502

Position

959937..961082

AA seq 381 aa
MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEML
QIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTHNLQERNLKILSLNYH
HNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIVQFGMPNYFGPQRFGKFNDNHQEG
LKILQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLN
INPNTLKALKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEAVPTGLLDGKK
ALYAKNLSLEIEKEFQHNLLSSHAKTLGSRRFFWVFVENITSQYVKEKAQFELGFYLPKG
SYASALLKEIKHEKGENNDEF

NT seq 1146 nt +upstreamnt +downstreamnt
atgaatttaaattttatgcccctattgcatgcttataaccatgcgagcattgattttcat
ttcaattctagcgctagggatttttgcgtgcatgaagtgcctttgtatgaattcagtaac
acaggcgaacatgccgttatccaagtgagaaaaagcggtttaagcactttagaaatgctt
caaattttttctcaaattttaggggtaagaatcgctgaattgggttatgccggcttgaaa
gataaaaacgcactgacgactcaattcatctcgctccctaaaaaatacgcccctttatta
gaaaaaaatacgcataatttgcaagaaagaaaccttaaaatcttgtctttgaattaccat
cataataaaatcaaattagggcatttgaaagggaatcgcttttttatgcgttttaaaaaa
atgacccccctaaacgctcaaaagactgaacaagttttagaacaaatcgtgcagtttggc
atgcctaattattttggcccgcaacgctttgggaagttcaatgacaaccaccaagagggt
ttaaaaatcttgcaaaatcaaacgaaattcgcccaccaaaaattaaacgcttttttaatt
tcaagctatcaaagttatttgtttaacgcacttttaagcaaacgattagaaatcagtaaa
atcattagcgcttttagtgtcaaagaaaatttagaatttttcaaacaaaaaaatttaaat
atcaatccaaacaccctaaaagcccttaaaaaccaagcccacccctttaaaatcttagaa
ggcgatgtgatgtgccattacccttacgggaagttttttgacgctttagaattagaaaaa
gagagcgaaaggtttttgaaaaaagaagctgtgcctacggggttattagacggcaaaaaa
gctctttatgcaaaaaatttgagtttagaaattgaaaaagaattccagcataatctttta
agtagccatgctaaaacgctaggatccaggcggtttttttgggtgtttgtagaaaatata
acttctcaatatgtgaaagaaaaagcgcaatttgaattgggattttacttgcctaaaggg
agttatgcgagcgcgttgctcaaagaaatcaagcatgagaaaggagaaaataatgacgaa
ttttga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

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