KEGG   Halomonas elongata: HELO_4426
Entry
HELO_4426         CDS       T01311                                 
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
hel  Halomonas elongata
Pathway
hel03420  Nucleotide excision repair
hel03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hel00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HELO_4426 (uvrD)
   03430 Mismatch repair
    HELO_4426 (uvrD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hel03400]
    HELO_4426 (uvrD)
Enzymes [BR:hel01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HELO_4426 (uvrD)
DNA repair and recombination proteins [BR:hel03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HELO_4426 (uvrD)
   MMR (mismatch excision repair)
    Other MMR factors
     HELO_4426 (uvrD)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PcrA_UvrD_tudor AAA_30 AAA_12 AAA_22 DEAD
Other DBs
NCBI-ProteinID: CBV44310
UniProt: E1VCE0
Position
complement(4010859..4013063)
AA seq 734 aa
MDDVTAILDQMNPAQREAVSAPQGNMLVLAGAGSGKTRVLVHRIAWLMQAEGLSPYAVLA
VTFTNKAAREMRTRLEALLGISLRHVWVGTFHSIAHRLLRTHWQDARLPQHFQIIDSDDQ
LRLIKRLLKDYNIDDERYPPRQVQSFISGCKEEGLRPHQVDAHGDAYLSQMVELYERYQL
TCERGGLVDFGELLLRSLELLRDNPALLAHYQERFGHVLVDEFQDTNTLQYAWLKLLTGM
RTPMTVVGDDDQSIYGWRGARIENIRRFENEFPDTKLVRLEQNYRSTSVILDAANALIRY
NADRMGKELWTAGDHGEPISVYGGFNDLDEARYIVDTIRERVAEGINRREIAILYRSNAQ
SRVIEETLIRQGVPYRIYGGQRFYERLEIKNALAYLRLLLNRDDDASLERVINVPARGIG
TRTVETLRNRARQTGDSLWQSLHNATSDGSLRGRAVSSLKAFADLIEQLDNEAAGLSLHE
IIDRVNERTGLVEHHRNEKGEKGQARVENLEELVTAAKAFTQGEAFEGVEAGEGMAALEA
FLAEAALNAGDHEADEFEDCVQLMTLHSAKGLEFPVVFMAGVEEGLFPHKMSMEEPGRLE
EERRLCYVGMTRAMKKLYLTHAELRRLHGKETFQRPSRFLREVPENFMEEVRLRGQVSRP
VTTSRPSPGLQQNGVEGGADLPSLSLGQRVSHPIFGEGVILNAEGEGERARVQVSFEGEG
DKWLVLGFAKLTPL
NT seq 2205 nt   +upstreamnt  +downstreamnt
atggacgacgtcacggcgatcctcgatcagatgaatccggcccagcgcgaggccgtcagt
gctccccagggcaacatgctggtactggccggtgcggggtcgggcaagacgagggtcctg
gtacatcgcatcgcctggctgatgcaggccgaagggctttctccctatgccgtgctggcg
gtgactttcaccaacaaggcggcccgggagatgcgcacgcggctcgaggccttgctgggc
atttcgttgcgccatgtctgggtgggaaccttccactccatcgctcatcgcctgttgcgt
acccattggcaggatgcccgcctgccgcagcatttccagatcatcgacagtgacgatcag
ctgcgcctcatcaagcgtcttctcaaggactacaacatcgacgacgagcgttatccgccg
cgtcaggtgcagtccttcatttcgggatgcaaggaagagggcctgcgcccccatcaggtg
gatgcgcatggtgatgcctacctgtcgcagatggtcgagctctatgagcgttatcagttg
acctgcgagcgtggcggcctggtggacttcggtgagctgctgctgcgcagtctggagctg
ctgcgcgacaatcccgctctgctggcccattaccaggagcgcttcggtcatgtgctggtc
gacgagttccaggacaccaataccctgcagtatgcctggctgaagctgctcaccggcatg
cgcacgccgatgaccgtggtcggcgacgacgaccagtcgatctatggctggcgtggggcg
cgcatcgagaacatccgccgcttcgagaacgaatttcccgacaccaagctggtgcgcctg
gagcagaactatcgttccaccagcgtgatcctcgatgccgccaacgccctgattcgttac
aacgccgatcgcatgggcaaggagttgtggaccgccggggaccatggcgagcctatctcg
gtgtatggcggcttcaatgatctcgacgaggcgcgctatatcgtcgacaccattcgcgag
cgggtcgccgaaggcatcaatcgccgcgagatcgccattctctatcgctccaacgcccag
tcccgagtcatcgaggagactcttattcgccagggcgtgccctaccggatctacggcggg
cagcgtttctacgagcggctggagatcaagaacgccctggcctatctgcgtctgctgctc
aaccgcgacgacgatgcctccctggagcgggtgatcaacgtgccggcgcgcggcatcggc
acccgcaccgtcgaaaccctgcgcaatcgtgcccgacagaccggggattcactctggcag
tcgctccacaatgccacctcggatggcagcctgcgcgggcgtgccgtctcgtcgctgaag
gccttcgccgatctgatcgagcagctcgacaacgaggccgcggggctgtcgctccacgag
atcatcgatcgcgtcaacgagcgtaccggcctggtcgagcatcaccgcaacgaaaagggc
gagaaaggccaggccagggtcgagaacctggaagaactggtcaccgcggccaaggccttc
acccagggcgaggccttcgaaggcgtggaagccggtgagggcatggccgccctggaagcc
ttcctggccgaagcggcgctcaatgccggcgaccacgaggccgacgaattcgaggactgc
gtgcaactgatgacgttgcactcggccaagggcctggaatttccggtggtgttcatggcc
ggcgtggaggaaggcctcttcccgcacaagatgtcgatggaagagcccgggcgtctcgag
gaggagcgtcggctctgctatgtgggcatgacacgtgccatgaagaagctctatctcacc
catgccgagcttcgtcgattgcatggcaaggagaccttccagcggccttcgcgcttcctg
cgcgaggtacccgagaacttcatggaggaagtcaggctgcgtggtcaggtctcgcgcccc
gtcaccacctcgcggccttcaccggggctgcagcagaacggtgtcgagggcggggcggat
ttgccgtccctgtcgcttggccagcgggtcagtcatcccatcttcggcgagggagtgatc
ctcaacgccgaaggcgagggcgagcgtgcacgcgtccaggtcagcttcgagggcgagggc
gacaaatggctggtgctgggattcgccaagttgacgccgttgtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (60)   

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