KEGG   Helicobacter pylori UM298: K748_08065
Entry
K748_08065        CDS       T02757                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
hem  Helicobacter pylori UM298
Pathway
hem03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hem00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    K748_08065
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hem03021]
    K748_08065
   03019 Messenger RNA biogenesis [BR:hem03019]
    K748_08065
Transcription machinery [BR:hem03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     K748_08065
Messenger RNA biogenesis [BR:hem03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     K748_08065
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB Spore_III_AA ATPase_2 AAA_22 AAA_18 AAA_28 AAA_25
Other DBs
NCBI-ProteinID: AGR63171
Position
complement(1327519..1328835)
AA seq 438 aa
MNENAPTHKSPHKVKTHTPVSGYHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEI
LKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVT
GQVRSPKDQEKYYALLKIEAINYLPSDEIKNRPLFDNLTPLFPDEQIKLEYEPTKVTGRM
LDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQR
SVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSS
GKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNS
EIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYS
KMQQTKDNEEFLNLMNEK
NT seq 1317 nt   +upstreamnt  +downstreamnt
atgaacgaaaacgcgcctacgcataaaagtccgcacaaagtcaaaacacacacgccagtg
agcggttatcacattgaagatttacgcacctaccctactgaaaagcttttagaaatcgct
aacaagctcaaagtggaaaacccccaagaattcaaacgacaagacttgatgtttgaaatt
ttaaaaacccaagttacgcaaggcggatacattctttttactgggattttagaaatcatg
cctgatggctatggctttttaagagggtttgatgggagtttttcagacgggcataacgac
acttatgtcagcccttctcaaatcaggcgttttgctttaaggaatggtgatattgttacc
ggtcaagtgcgatcccccaaagaccaggaaaagtactacgcccttttaaaaatagaagcc
atcaattatttgccttcagatgagattaaaaaccgccccttgtttgacaatctaacccct
ctattccctgatgaacaaatcaaattagaatacgaacccactaaagttaccggcagaatg
ctagatttattcagccctgtggggaaaggtcaaagggctttgatcgtcgcgccaccaagg
actgggaaaacggaactcatgaaagaactcgcccaaggcatcacctctaaccaccctgaa
gtggagctgattatccttttagtggatgagcgccctgaagaagttacggatatgcaacga
agcgttaaaggtcaagtttttagctccacttttgatctgcccgcaaacaaccacataaga
atcgctgaattagtcctagaaagggctaaaaggcgggtggaaatgggcaaagatgtggtg
gttttactagattctatcacccgtttagccagagcgtataacgctgtaacgccttcaagc
ggtaaggttttaagtggaggcgtggatgcgaacgccttgcacaggcccaagcgctttttt
ggagccgcaaggaatattgaagaaggcgggagcttaacaattatcgctactgcattgatt
gaaacgggatctagaatggatgaggtgatttttgaagaatttaaaggcaccgggaatagc
gaaattgttttagcgaggaatattgcagacagacgcatttacccggcctttgatatttta
aaatccggcacacgaaaagataatattttgcttggcaaagaccgcttgactaaagtgtgg
gttttaaggaatgtgatgcaacaaatggatgacatagaagccttaagctttgtgtattct
aaaatgcaacaaactaaggacaatgaagaatttttaaatttaatgaatgaaaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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