KEGG   Helicobacter pylori Puno135: HPPN135_02715
Entry
HPPN135_02715     CDS       T01920                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
heu  Helicobacter pylori Puno135
Pathway
heu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:heu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HPPN135_02715 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:heu03021]
    HPPN135_02715 (rho)
   03019 Messenger RNA biogenesis [BR:heu03019]
    HPPN135_02715 (rho)
Transcription machinery [BR:heu03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     HPPN135_02715 (rho)
Messenger RNA biogenesis [BR:heu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     HPPN135_02715 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB Spore_III_AA ATPase_2 AAA_22 AAA_18 AAA_28 AAA_25
Other DBs
NCBI-ProteinID: AEN18243
UniProt: G2M9L6
Position
complement(542826..544142)
AA seq 438 aa
MNENVPAHKSPHKVKTHTPVSGYRIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEI
LKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVT
GQVRSPKDQEKYYALLKIEAINYLPSDEIRNRPLFDNLTPLFPDEQIKLEYEPTKVTGRM
LDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQR
SVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSS
GKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNS
EIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYS
KMQQTKDNEEFLNLMNEK
NT seq 1317 nt   +upstreamnt  +downstreamnt
atgaacgaaaatgtgcctgcacacaagagtccgcacaaagtcaaaacacacacgccagtg
agcggttatcgcattgaagatttacgcacctaccctactgaaaagcttttagaaatcgct
aacaagctcaaagtggaaaacccccaagaatttaaacgacaagacttgatgtttgaaatt
ttaaaaacccaagttacgcaaggcggatacattctttttaccgggattttagaaatcatg
cctgatggctatggctttttaagagggtttgatgggagtttttcagacgggcataacgac
acttatgtcagcccttctcaaatcaggcgttttgctttaaggaatggcgatattgttacc
ggtcaagtgcgatcccccaaagaccaggaaaaatactacgcccttttaaaaatagaagcc
atcaattatttgccttcagatgaaattagaaaccgccctttgtttgacaatctaaccccc
ctattcccagatgaacaaatcaaattagaatacgaacccactaaagttaccggcagaatg
ctggatttattcagccctgtggggaaaggtcaaagggctttgatcgtcgcgccaccaagg
actgggaaaacagagctcatgaaagaactcgcccaaggcatcacctctaaccaccctgaa
gtggaactgattatccttttagtggatgagcgccctgaagaagttacggatatgcaacga
agcgttaaaggtcaagtttttagctccacttttgacttgccagcaaacaaccatataaga
atcgctgagttggtgctagaaagggctaagaggcgagtggaaatgggaaaagatgtggtg
gttttattggattctatcacccgtttagccagagcgtataacgctgtaacgccttcaagc
ggtaaggttttaagtgggggcgtggatgcgaacgccttgcacagacccaagcgctttttt
ggagcggcaaggaatattgaagaaggcgggagcttgacgattatcgctactgcgttgatt
gaaacgggatctagaatggatgaggtgatttttgaagaatttaaaggcactgggaatagc
gaaatcgttttagcgaggaatattgcagacaggcgcatttacccggcctttgatatttta
aaatccggcacacgaaaagataatatcttgcttggcaaagatcgcttgactaaagtgtgg
gttttaaggaatgtgatgcaacaaatggatgacatagaagccttaagttttgtgtattct
aaaatgcaacaaactaaggacaatgaagaatttttaaatttaatgaatgaaaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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