KEGG   Helicobacter pylori F57: HPF57_1207
Entry
HPF57_1207        CDS       T01912                                 
Symbol
vacB
Name
(GenBank) 3'-5' exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
hex  Helicobacter pylori F57
Pathway
hex03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hex00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HPF57_1207 (vacB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hex03019]
    HPF57_1207 (vacB)
   03016 Transfer RNA biogenesis [BR:hex03016]
    HPF57_1207 (vacB)
Enzymes [BR:hex01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     HPF57_1207 (vacB)
Messenger RNA biogenesis [BR:hex03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HPF57_1207 (vacB)
Transfer RNA biogenesis [BR:hex03016]
 Prokaryotic type
  tRNA degradation factors
   HPF57_1207 (vacB)
SSDB
Motif
Pfam: RNB
Other DBs
NCBI-ProteinID: BAJ60281
UniProt: E6NT15
Position
complement(1293122..1295056)
AA seq 644 aa
MQGFLRSLFFGVKKIPKPFAPLIEKGVLKEAVRFNKERYFLKEGFDIGRIERAENKAFFI
SLAKNYPKDPLIKNLPPSFKTDALILCKIECSKKRPIAFFKAALLNADHTMIAYLAKKNH
QIVAIPFKEPFKKPILLKHSQRSLLELPRHCVVKIDLKKREISEILGALEDPLIDENLSL
SLFDRIKDFSKDCLNLAKHYAQLKASDFKNRINYSHIPFITIDPKDAKDFDDAIFYDQER
RVLFVAVADVSEFVPKYSSLDKEARVRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLA
LVYEIPLDNLENARLFQGVIEVRANCTYEEINHFLSAQQSSLDKDLQQSLLGFLEMALKL
KKERLKKGFNFNSFENKLHLNKEGRIEKIETQKESNAHTLIEEAMLLANQSSANLLDKHF
QNKGIYRTHKEPSLEQQKRLCGKLFDYEIMRPKNMGFFSFLEHALKIAKEKKLEREVSRL
IIKSQNLALYSPVQESHFGLGFASYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLE
ETPELCAELNALQKKAALIERDFVKRKFARLALELLEKEFLGVVLEVKDGVVVGLKEWVG
LKVLVKTNKVFKSLEKVRVKITHADLILGQVWGEITERIKEHVS
NT seq 1935 nt   +upstreamnt  +downstreamnt
atgcaagggtttttaagaagcctgttttttggggttaaaaagatccctaaaccattcgct
cctctaatagaaaagggcgttttaaaagaagcggtcagattcaacaaggaacgctatttt
ttaaaagaaggctttgatataggcagaattgagcgggcagaaaataaggcgtttttcatt
tctttagcgaaaaattaccccaaagaccctttaatcaaaaacttacccccatcttttaaa
acagacgctttgattttatgcaaaatagaatgctctaaaaaacgccccatagcctttttt
aaagccgctcttttaaatgcagatcacacgatgatagcttacttggctaaaaaaaaccac
cagattgtggctatcccttttaaagagccttttaaaaaacccattcttttaaagcacagc
caaagatccttattagaattgcccaggcattgcgtggtaaaaatcgatcttaaaaagcgt
gaaatcagcgaaattttaggggctttagaagaccctttaatagatgaaaacctttcttta
agcctttttgacaggattaaggatttttcaaaagattgtttgaatttagctaaacattac
gcgcaacttaaagcgagcgattttaaaaataggatcaattattctcacatcccttttatc
accattgaccccaaagacgctaaagattttgacgatgcgattttttatgatcaagaaaga
agggttttgtttgtggcggttgctgatgtgagcgaatttgtgccgaaatattccagtttg
gataaagaagctagggttaggggctttagcgtgtatttccctaatagcgtgtatcccatg
ctgcctttgagtttgtctcaaggggcatgctcgctaaaagcgtttgaaaaacgcctggct
ttagtgtatgaaatccctttagacaatttggaaaacgcccgattgtttcaaggcgttatt
gaagttagggctaattgcacctatgaagaaatcaatcattttttaagcgctcaacaaagc
tctttggataaagatttgcaacaaagccttttggggtttttagaaatggcgttaaagtta
aaaaaggagcgtttaaaaaaagggtttaatttcaattcgtttgaaaacaagctgcatttg
aataaagaagggcgtatagaaaaaattgaaacgcaaaaagaaagcaacgcgcacaccctt
atagaagaagccatgctattagccaaccaatctagcgcgaatttattggataagcatttt
caaaataaggggatataccgcacccataaagagccgagtttggagcagcaaaaacgcctt
tgcggcaagctttttgattatgagatcatgcgccctaaaaacatgggctttttttctttt
ttagagcatgctttaaagatagccaaagaaaagaagttagaaagagaggtttcgcgctta
atcattaaatctcaaaatttagccctttatagccccgtgcaagaaagccattttggtttg
gggtttgccagctatacgcatttcacttcgcccattagacgatacagcgatttagcctta
cacaggcttttaaaagaattgttgttccatcaagctaaaggctgttcgtatttgctagaa
gaaacgcctgaattgtgcgctgaattgaacgctttacaaaaaaaggccgctttgattgaa
agggattttgtcaaacgcaaattcgctcgcttagctttagaacttttagaaaaagaattt
ttgggcgttgttttggaggttaaagatggggtggtggtggggctaaaagaatgggtaggg
cttaaagttttagtcaaaacgaacaaggtttttaagtctttagaaaaggtgcgcgttaaa
atcacgcatgcggatttgattttagggcaagtttggggcgaaatcacagaaaggattaaa
gagcatgtatcgtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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