KEGG   Heterocephalus glaber (naked mole-rat): 101708310
Entry
101708310         CDS       T02812                                 
Symbol
Lsm3
Name
(RefSeq) LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
hgl  Heterocephalus glaber (naked mole-rat)
Pathway
hgl03018  RNA degradation
hgl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hgl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101708310 (Lsm3)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101708310 (Lsm3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hgl03019]
    101708310 (Lsm3)
   03041 Spliceosome [BR:hgl03041]
    101708310 (Lsm3)
Messenger RNA biogenesis [BR:hgl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     101708310 (Lsm3)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     101708310 (Lsm3)
Spliceosome [BR:hgl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    101708310 (Lsm3)
 Complex C
  U2 snRNP components
    101708310 (Lsm3)
SSDB
Motif
Pfam: LSM TIG_SUH vATP-synt_E DUF150_C
Other DBs
NCBI-GeneID: 101708310
NCBI-ProteinID: XP_004870559
UniProt: A0A0N8EUZ7
Position
Un
AA seq 102 aa
MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq 309 nt   +upstreamnt  +downstreamnt
atggcggacgacgtggaccagcaacaaaccaccaacactgtagaggagccactggatctc
atcagactcagcctggatgagcgaatctatgtgaaaatgagaaatgaccgagagcttcga
ggcagattacatgcttatgatcagcatttaaatatgatactgggagatgtggaagaaact
gtgactactatagaaattgatgaagagacatatgaagagatatacaaatcaacaaaacgg
aatatcccgatgctctttgtccggggagatggtgttgtgctggttgcccctccactaaga
gttggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (30)   

Download RDF
DBGET integrated database retrieval system