KEGG   Halorhodospira halophila: Hhal_0659
Entry
Hhal_0659         CDS       T00462                                 
Name
(GenBank) RNAse R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
hha  Halorhodospira halophila
Pathway
hha03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hha00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Hhal_0659
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hha03019]
    Hhal_0659
   03016 Transfer RNA biogenesis [BR:hha03016]
    Hhal_0659
Enzymes [BR:hha01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Hhal_0659
Messenger RNA biogenesis [BR:hha03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Hhal_0659
Transfer RNA biogenesis [BR:hha03016]
 Prokaryotic type
  tRNA degradation factors
   Hhal_0659
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 HTH_IclR LexA_DNA_bind OB_Dis3 RNase_II_C_S1
Other DBs
NCBI-ProteinID: ABM61441
UniProt: A1WUS9
Position
complement(739742..742270)
AA seq 842 aa
MAKQTKKSPPKRDPYQEREQAKYDNPIPSREYLLELLAAHRRPLGRREIADALGLESPEH
HEALRRRLRAMERDGQLVRNRRRGYLVVDHSELVRGRVMGRPDGSGFLLPDGTGDRLALS
PRQMRCLLHGDRAVARITGRDEHGTPQGELVEILERGNRQITGRFFEEHGVGFLVPENKR
LQQDVLLAPDGRGGAEDGELAVAEILAQPNERRQPIGRIIQVLGRTIHVGEEDMVAARIH
GIPMDWPAEVEKEVAAFGEEVPEADKEGRTDLRRLPLVTIDGADAKDFDDALYCEPTAKG
WRLVVAIADVSHYVRPGTALDQEARLRGNSVYFPRSVVPMLPEALSNGLCSLNPKVDRLA
MVCDMLLQGNGKVLRSRFYRAVIQSAARLTYEQAAAAVVDGDRKVRSAIGDEVVRHLENL
HGLYKTLRKARDERGAIDFDTTETEMRFDDEGRVVAVEPTERNDFHKVVEECMIAANVCT
AKFLLKNKVPSLYRVHERPGEQKLEQLKEFLAQAGLELGGGDEPTGKDYGRIMEQARERP
DRHLIETVLLRSMQAAEYRPDNAGHFGLALEAYTHFTSPIRRYPDLVIHRGIGHVIDGHR
GRSFPMTHNDLVTLGEHCSMAERRADEATRDAEMTLKCEYLSDHLGDEFTGVIAAVTSFG
LFVSLEGVYVDGLVHITNLESDFFHFDSVGHRLVGDRTGKEYRLSDRVRVRVGRVDKDDR
KIDLEVVAHPVDADGEPLDGSRKRGKGGKSGQGGKARSERSGGKQSAARQGASGGRAKSG
RGKAAPSGSGPSGDGKGKPAEAAEESAEPTAEAQDGGASKGRRRSRRSGRRRSSSSAGGD
SS
NT seq 2529 nt   +upstreamnt  +downstreamnt
atggcgaagcaaaccaagaaaagtcccccgaaacgcgatccttatcaggagcgcgaacaa
gcgaagtacgacaaccccatccccagccgggagtatctgctggaactcctcgctgcccat
cggcgcccgctgggccggcgcgagatcgccgacgccctggggctggagagcccggagcat
cacgaggcgctgcgtcgccggctgcgcgccatggagcgcgacgggcagctggtgcgcaac
cgccgccgcgggtacctggtcgtcgatcacagcgaactggtccgcggtcgagtcatgggc
cgcccggacggctccggcttccttctgcccgatggcacgggcgaccggttggccctgtcg
ccgcgtcagatgcgctgcctgctccacggcgatcgcgctgtagcacgcatcaccggccgc
gacgagcacggtaccccgcagggtgagctggtcgagatcctcgagcgcggcaaccggcag
atcaccgggcggttctttgaggagcacggggtcgggttcctggtgccggagaacaagcgg
ctgcagcaggacgtcctgcttgcgccggacgggcgcggcggtgccgaggacggtgagctg
gcggtggccgagatcctcgcccagcccaacgagcgtcgccagcccatcggccggatcatc
caggtgctcgggcgcacgatccatgtcggcgaagaggacatggtggcggcgcggatccac
ggcatccccatggattggcccgctgaggtggagaaagaggttgcggccttcggtgaggag
gtcccggaggccgacaaggaagggcgcaccgatctgcgccggctgccgctggtgaccatc
gacggtgccgacgccaaggacttcgacgacgcgctctattgcgagcccaccgccaagggc
tggcgcctggtggtggccatcgccgacgtctcgcactacgtgcgccccggcacggcgctg
gatcaggaggcgcgcctgcggggcaactcggtctacttcccgcgttcggtggtgccgatg
ctgcccgaggccctgtccaacgggctgtgctcgctgaaccccaaggtcgatcgactggcc
atggtctgcgacatgctcttgcagggcaacggcaaggtgctgcgctcgcgcttctaccgc
gcggtgatccagtcggcggcgcggctgacctacgaacaggccgcggcggccgtggtcgac
ggcgaccgcaaggtgcgatcggccatcggcgacgaggtggtgcgccacctggagaacctg
cacggcctctacaagacgctgcgcaaggcccgcgacgagcggggggccatcgacttcgac
accaccgagaccgagatgcgcttcgatgacgaggggcgtgtggtggccgtcgagcccacc
gagcgcaacgacttccacaaggtcgtggaagaatgcatgatcgctgccaacgtctgcacg
gccaagttcctgctcaagaacaaggtgccgtcgctctatcgggtccacgagcgccccggt
gagcagaagctcgagcagctcaaggagttcctcgcccaggccgggctggaactcggcggc
ggtgatgagcccaccggcaaggattatggccggatcatggagcaggcccgcgagcgcccg
gatcgccacctgattgagacggtgctgctgcgctcgatgcaggcggccgagtatcgcccc
gataatgcgggtcacttcgggctggcgctggaggcgtatacccacttcacctcgcccatc
cgtcgttatccggatctggtgatccaccgagggatcggccacgtgattgatggccaccgg
gggcgtagcttcccgatgacccacaacgacctggtcaccctcggcgagcactgctcgatg
gcggagcgccgggccgacgaggcgactcgcgatgccgagatgacgctcaagtgcgagtac
ctctcggaccacctgggggatgagttcaccggggtgatcgcggcggtgacctccttcggg
ctgttcgtctcgctggagggggtctacgtggacggcctggtgcacatcactaacctggag
agtgacttcttccacttcgattcggtggggcatcggctggtcggcgaccgcaccggcaag
gagtaccggctcagtgaccgggtccgggtccgcgtggggcgcgtcgacaaggacgatcgc
aagatcgacctcgaggtggtcgcccatccggtggatgccgacggtgaaccgctggacggc
agccgcaagcgtggcaagggtggcaagagcggtcagggcggcaaggcccgttcggagcgc
tccggcggcaagcagtctgcggcgcgccaaggggcctccggggggcgcgcgaaaagcggc
cggggcaaggccgctccatccggatccggcccctccggtgacggcaagggcaagccggcc
gaagcagccgaggagtcggcggagccgacggccgaagcgcaggatggcggcgccagcaag
gggcggcgccgaagccggcgctccggtcgtcggcgcagcagcagtagcgccggcggcgac
agcagctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (42)   

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