KEGG   Halobacterium hubeiense: Hhub_3665
Entry
Hhub_3665         CDS       T04202                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD)
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
hhb  Halobacterium hubeiense
Pathway
hhb03030  DNA replication
hhb03410  Base excision repair
hhb03420  Nucleotide excision repair
hhb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hhb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Hhub_3665 (ligA)
   03410 Base excision repair
    Hhub_3665 (ligA)
   03420 Nucleotide excision repair
    Hhub_3665 (ligA)
   03430 Mismatch repair
    Hhub_3665 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hhb03032]
    Hhub_3665 (ligA)
   03400 DNA repair and recombination proteins [BR:hhb03400]
    Hhub_3665 (ligA)
Enzymes [BR:hhb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Hhub_3665 (ligA)
DNA replication proteins [BR:hhb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Hhub_3665 (ligA)
DNA repair and recombination proteins [BR:hhb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Hhub_3665 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Hhub_3665 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     Hhub_3665 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Hhub_3665 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT HHH DNA_ligase_ZBD
Other DBs
NCBI-ProteinID: CQH62166
UniProt: A0A0U5H6V9
Position
I:2416484..2418619
AA seq 711 aa
MADADALEDAPEDNPYVRDPDTDFAPVEDLTEDDAEEQVKLLREAVRYHDYRYYVQNDPV
ISDYAYDRLFERLQQLEDAFDLQTEDSPTQRVGGEPVEGLGTVEHVAPMLSIDSSGEEAD
VREFAARVEREVGETDFVCEPKFDGLSVEVVYEEGRYVRAATRGDGETGEDVTENVRTIE
SVPQRLRGDPPDFLAVRGEVYIPREAFQEYNAERVERGEEPFANPRNAAAGTLRQLDPSV
TAERPLDCFFYDVLAAGKSEADVDADASRGGLDAGFDTHWAEHEALPDWGLKVNERTELA
DDVEEAIAFRDDLAAVREDLNYEIDGVVLKVDDRRACVDLGVTARHYRWAYAYKFPPRAE
VTTIRDVVVQVGRTGRLTPVALLEPVEVGGVTVSRASLHNQEEIAEKGVGIGDDVRVERA
GDVIPYVDEVVESHSEGHFQMPEECPRCGSDVEYDGPIAYCTGGLACPAQLVRAVGYFAD
VLDVEGIGEAAAQQFVEEGLVEDDVADLYELAEADLAELEGWGERSARNLLAELDAARHP
PLGEFLAAIGIPEVGPTVARDLADHFGTLDALLSADERDLREVEGVGEVVAGHVREFLDN
ERNRRVIERLRDEDRLGEPEFPEETGGDELEGLTVVFTGSVEGWTRDDLQDLVVRHGGDA
PSSVSGNTDYLVVGENPGTSKREDADEHDVPELSPGEFFELLDERGVDADR
NT seq 2136 nt   +upstreamnt  +downstreamnt
atggcagacgcggacgccctcgaagacgcgcccgaggacaacccctacgtccgagacccc
gacaccgacttcgcgcccgtcgaggatctcaccgaggacgacgccgaagagcaagtgaaa
ctgctccgggaggccgtccgctaccacgactaccgctactacgtccagaacgaccccgtc
atctccgattacgcctacgaccggctgttcgagcgcctccagcagttagaggacgccttc
gacctccagaccgaggacagcccgacgcagcgcgtcggcggcgagcccgtcgagggactg
ggcaccgtcgagcacgtcgcgccgatgctctccatcgactccagcggcgaggaggccgac
gtccgagagttcgccgcccgcgtcgagcgcgaggtcggtgagacggacttcgtctgcgag
ccgaagttcgacgggctctccgtggaagtcgtctacgaggagggccggtacgtacgcgcc
gccacgcgcggcgacggcgagaccggcgaggacgtcaccgagaacgtccgcaccatcgag
agcgtcccccagcgcctgcgcggagacccgccggacttcctcgcagtgcgcggcgaggtg
tacatcccgcgggaggcgttccaagagtacaacgccgagcgcgtcgagcgcggcgaggag
ccgttcgcgaatccccggaacgccgccgccgggacgctgcgccaactcgacccgagcgtc
accgccgaacgccccctcgactgcttcttctacgacgtattggctgcgggaaagagcgag
gcagacgtggatgcggacgcctcgcgcggcggcctcgacgccggcttcgacacgcactgg
gcggaacacgaggcgctccccgactggggattgaaggtcaacgagcgcaccgaactcgcc
gacgacgtcgaggaggccatcgcgttccgcgacgacctcgcggccgtgcgcgaggacctg
aactacgaaatcgacggcgtcgtactcaaagtcgacgaccgccgggcgtgcgtggacctc
ggagtcacggcccgccactaccggtgggcgtacgcgtacaagttcccgccgcgcgcggaa
gtcacgacaatccgggacgtcgtcgtgcaggtcggacggacgggccggctcacgccggtc
gcgctgctcgaacccgtcgaagtcggcggcgtcacggtctcgcgcgcgagcctccacaat
caggaggagattgcggagaagggcgtgggaatcggcgacgacgtgcgcgtcgagcgcgcc
ggcgacgtgattccgtacgtcgacgaagtggtcgaatcccacagcgaggggcacttccag
atgccggaggagtgcccgcgctgcgggagcgacgtggagtacgacggccccatcgcgtac
tgcacgggcgggctggcgtgtcccgcccagttggtgcgcgcggtcggctacttcgcggac
gtcctcgacgtcgagggcatcggcgaggcggccgcccagcagttcgtcgaggaagggctc
gtcgaggacgacgtcgcagacctctacgaactcgcggaagcggacctcgcggaactggag
gggtggggcgagcggagcgcgcggaacctgctcgcggagctggacgccgcgcgccacccg
ccgctgggcgagttcctcgccgccatcggcatccccgaggtcgggccgacggtcgcccgc
gacctcgccgaccacttcgggacgctggacgcgctactttccgccgacgagcgcgacctc
cgcgaggtcgagggcgtcggcgaggtggtcgccggccacgtccgggagttcctcgacaac
gagcgcaaccgccgcgtcatcgagcgcctccgcgacgaggaccgcctcggcgaacccgag
ttccccgaagagaccggtggcgacgaactcgagggactcactgtcgtcttcacggggagc
gtcgaggggtggacgcgagacgacctccaggacctcgtggtgcgccacggcggcgacgcg
ccctcctcggtgtccgggaacaccgactacctcgtcgtcggcgagaaccccggcacgagc
aagcgcgaggacgccgacgagcacgacgtccccgagctctcgcccggggagttcttcgag
ctactggacgagcgcggcgtggacgcggaccgatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

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