KEGG   Herbaspirillum huttiense: E2K99_18415
Entry
E2K99_18415       CDS       T05937                                 
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
hhf  Herbaspirillum huttiense
Pathway
hhf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hhf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    E2K99_18415 (sbcB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hhf03400]
    E2K99_18415 (sbcB)
Enzymes [BR:hhf01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     E2K99_18415 (sbcB)
DNA repair and recombination proteins [BR:hhf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     E2K99_18415 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     E2K99_18415 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      E2K99_18415 (sbcB)
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T
Other DBs
NCBI-ProteinID: QBP76850
UniProt: A0A4P7ABE9
Position
4120634..4122070
AA seq 478 aa
MSNHTFLWHDYETFGAVPRRDRPSQFAAVRTDAELNEIGEPIMLYCKPAPDYLPDPVSCL
ITGITPQHCLAHGVPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA
REWANGCGRWDLLDVVRLTYALRPEGIQWPTKEDGSVSFKLEHLSKANGLVHEAAHDALS
DVRATIALARLIRQNNPRLFDFALALHKKDKAAAEIGLPAAKPFLHVSGMFPVANGCLAL
MWPLGMHPTNKNEVIAWDLGYDPSELAGMDAATVRERMFTKRDEMPEGMVRLPVKSIHLN
KSPMVVGSLKTLSAERAAQLNIDVDLALRHAEKAAALPDLSPLWREVYQREQEAPPDVDE
DLYGGFIGNGDRRQLTQLRALPPQGLAGASVAFDDMRLNEILFRYRARNFPETLSPEEAQ
HWEEHRAARLFEGAGGARTVAQLFEQIDQLQEEADDERTQDILGALYDYAEMIAPANQ
NT seq 1437 nt   +upstreamnt  +downstreamnt
atgtccaatcacaccttcctctggcacgactacgaaacctttggcgccgtgccgcgccgc
gaccgtccctcgcagttcgccgccgtgcgcaccgatgccgagctcaacgagatcggcgag
cccatcatgctgtactgcaagccggcgccggactacctgcccgacccggtgtcctgcctg
atcaccggcatcaccccgcagcactgcctggcgcacggcgtccccgaacatgagttcgcg
gcccgcatcgagcaggcgctgggcgagcccggcaccatcggcgtgggctacaacaccatc
cgcttcgatgatgaagtcacgcgcttcatgttctggcgcaacctgatcgatccctatgcc
cgcgaatgggccaacggctgcggccgctgggacctgctcgacgtggtgcgcctgacctat
gcgctgcgcccggagggcatacagtggccgaccaaggaagacggcagcgtcagcttcaag
ctggagcatctgtccaaggccaatggcctggtgcatgaagcggcgcacgatgcgctgtcg
gatgtgcgcgccaccatcgccctggcacgcctgatccgccagaacaatccgcgcctgttc
gacttcgcgctggccttgcacaagaaggacaaggccgcagcggaaatcggcttgccggcc
gccaaacccttcctgcacgtctccggcatgttcccggtagccaatggctgcctggcgctg
atgtggccgctgggcatgcatccgaccaacaagaatgaagtgatcgcctgggatctcggc
tatgacccgagcgaactggcgggcatggatgcggccaccgtgcgtgaacgcatgttcacc
aagcgcgacgagatgccggaaggcatggtccgcctgccggtcaagagcattcacctgaac
aagtcgccgatggtggtcggcagcctcaaaacgctgtctgccgagcgcgccgcgcagctg
aacatcgatgtcgacctggccctgcgccacgcggaaaaagccgccgccctgccggacctg
agcccgctgtggcgcgaggtttaccagcgcgagcaggaggcgccgccggacgtggatgaa
gatctgtacggcggcttcatcggcaacggcgaccgccgccagctgacgcagctgcgtgcc
ttgccgccgcaggggctggccggggccagcgtggcctttgacgatatgcgcttgaatgaa
atcctgttccgctatcgcgcacgcaacttccccgagaccttgagccccgaggaagcacag
cactgggaagaacaccgcgccgctcgcctgtttgaaggcgctggcggtgcgcgtaccgtc
gcgcaactgttcgagcagatcgaccagttgcaggaggaggcggatgacgaacgcacccag
gacatcctcggtgcgttgtatgactatgcagagatgattgcgccagccaatcagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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