KEGG   Helicobacter pylori Shi417: HPSH417_01305
Entry
HPSH417_01305     CDS       T02039                                 
Symbol
xseA
Name
(GenBank) exodeoxyribonuclease VII large subunit
  KO
K03601  exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
Organism
hhr  Helicobacter pylori Shi417
Pathway
hhr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hhr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    HPSH417_01305 (xseA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hhr03400]
    HPSH417_01305 (xseA)
Enzymes [BR:hhr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.6  exodeoxyribonuclease VII
     HPSH417_01305 (xseA)
DNA repair and recombination proteins [BR:hhr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     HPSH417_01305 (xseA)
SSDB
Motif
Pfam: Exonuc_VII_L tRNA_anti_2 tRNA_anti-codon Viral_P18 DUF6645 SSB
Other DBs
NCBI-ProteinID: AFH97416
Position
256522..257784
AA seq 420 aa
MDVLSVSEINAQIKALLEATFLQVRVQGEVSNLTIHKVSGHAYFSLKDSQSVIRCVLFKG
NANRLKFALKEGQEVVVFGGISAYVPRGDYQINCFEIEPKDIGSLTLALEQLKEKLRLKG
YFDEANKLPKPHFPKRVAVITSQNSAAWADMKKIASKRWPMCELVCINALMQGEGCVQSV
VESIAYADSFHGTKNAFDAIVVARGGGSMEDLYSFNDERIADALHLAKTFSMSAIGHESD
FLLSDSVADLRASTPSNAMEILLPSSDEWLQRLDGFNVKLHRSFKILLHQKKAHLEHLEA
SLKRLSFENKHHLNALKLEKLKIALENKTLEFLRFKKTLLEKISTQTLTSPFLQTKTERL
NRLENALKLAHANLKLPQFGAFVSKNNQAIELEALKRGDKIELSNEKARASAEILSVDRV
NT seq 1263 nt   +upstreamnt  +downstreamnt
gtggatgtattgagcgtgagcgaaatcaatgcgcaaatcaaagcccttttagaagcgact
tttttgcaagttagggttcaaggggaagtgagtaatttgacgatccataaggtgagcggc
catgcgtatttttcgctcaaagacagccagtcagtcatcagatgcgtgctgtttaaaggg
aacgctaacaggctcaaattcgctttaaaagaagggcaggaagtggttgtttttgggggc
attagcgcgtatgttccaaggggggattatcaaatcaattgctttgaaatagagcctaaa
gatataggttcattaaccctagctttagagcaattgaaagaaaaattacgccttaaaggc
tattttgatgaagccaacaaattacccaaaccgcattttcctaaacgagtggcagtcatc
acttctcaaaattcagccgcttgggcggacatgaaaaagatcgcttccaaacgatggccg
atgtgcgaattggtttgcatcaatgcgttaatgcaaggggagggctgcgttcaaagcgtg
gtggagagcatcgcttatgcggatagctttcatggcacaaaaaacgcttttgatgcaatt
gtggtggctaggggtggggggagcatggaggatttgtattctttcaatgatgagagaatc
gctgatgcattgcatttggctaaaactttcagcatgtcagctattgggcatgagagcgat
tttttattgagcgattcggtagcggatttaagggcttctacgccttcaaacgcgatggag
attttactccctagcagcgatgaatggttgcaaagacttgatgggtttaatgtgaaattg
caccgctcttttaaaattttgctccatcaaaaaaaggcgcatttagagcatttagaggct
tctttaaaacgattgagctttgaaaacaagcaccatttaaacgctttaaagctagaaaaa
ttaaaaatcgctttagaaaataaaaccctagaatttttacgctttaaaaaaacgctttta
gaaaaaatttctactcaaacattaacaagcccttttttacaaactaaaacagagcgatta
aacaggctagaaaacgcccttaaactcgctcatgcaaatttgaaattaccccaatttggg
gcgtttgtgagcaaaaataaccaagcgatagaattagaggcattaaaaaggggcgataag
attgaattgagcaatgaaaaagccagagcgagcgctgaaattttaagcgtggatagggtg
tag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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