KEGG   Helicobacter pylori Shi417: HPSH417_07210
Entry
HPSH417_07210     CDS       T02039                                 
Name
(GenBank) DNA helicase II
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
hhr  Helicobacter pylori Shi417
Pathway
hhr03420  Nucleotide excision repair
hhr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hhr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HPSH417_07210
   03430 Mismatch repair
    HPSH417_07210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hhr03400]
    HPSH417_07210
Enzymes [BR:hhr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HPSH417_07210
DNA repair and recombination proteins [BR:hhr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HPSH417_07210
   MMR (mismatch excision repair)
    Other MMR factors
     HPSH417_07210
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 Viral_helicase1 AAA_30 PcrA_UvrD_tudor AAA_11
Other DBs
NCBI-ProteinID: AFH98558
Position
complement(1481207..1483252)
AA seq 681 aa
MDFEKSILDNLNEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLT
LTFTNKASKEMQERALKLLENQTLIPPLLCTFHRFGLLFLRQHMNLLKRACDFSVLDGDE
VKTLCKQLKISSFRASISQIKNGMVDLSMQDSECHKAYELYQNALKKDNLVDFDDLLFLS
LKILQDNETIAKETSERYHYIMVDEYQDTNALQLEFLKKLSFTHHNLCVVGDDDQSIYGF
RGADISNILNFSKHFKGAKVVKLETNYRSSAEILACANSLISHNQHRHKKTLQSFKGSHK
SVVCKEYLTQKEESLDVAYQIKALLKKGENLENIAILYRLNGLSRSIEESLNALNIPYRL
IGAVSFYERAEVKDALAFMHLVAKKDDRFFIKRVLNKPSRGLGKITQEWIFSLLDGEGLN
LEEVLKLGVFKGKLNPKNEHALNKFIAMIGRLREAFEISVEEFCARFLEETNLLKSYEKE
DNYEEREGFVKELLALVKEHFKTNPTHSLLDFLNESVLDTHNTENAQKVSCMSVHMSKGL
EFKHVFVIGLEEGFFPHRGFNQESDLEEERRLAYVAITRAKEGLQLSYVQERSYFGRKIS
CSPSVFLEEAKLLKQDNPPKQDHKKDTPIKVGDLIRHKIFGTGRVLGVEKGLSGLCLKIN
CGGNVYDKISVKFVEKVDNGF
NT seq 2046 nt   +upstreamnt  +downstreamnt
atggattttgaaaaaagcattttagacaatttgaacgaagcgcaaaaaatcgctgcaagc
cacattcaagggcctttgctgattttagcgggagctgggagcggtaagactaagacttta
acgagccgtttagcgtatttgattggcgcttgtggcgtgcctagcgagaacactttaacg
ctcactttcaccaataaagcgagtaaagaaatgcaagaaagggctttgaaattgttggaa
aaccaaacccttatcccccccttgctttgcactttccatcgttttggtttgctgttttta
aggcaacacatgaaccttttaaaaagagcgtgcgatttttcggtgttagatggcgatgaa
gtaaaaacgctgtgcaaacagcttaaaatttcaagctttagagccagtatttctcagatc
aaaaacggcatggttgatttaagcatgcaagatagcgaatgtcataaagcgtatgagctt
taccaaaacgcgcttaaaaaagacaatttagtggattttgacgacttgctttttttaagc
cttaagattttgcaagataatgaaaccatcgccaaagaaactagcgagcgctaccattac
attatggtagatgagtatcaagacacgaacgccttgcaattagaatttttaaaaaaattg
agtttcacgcaccataatttgtgcgtggtgggcgatgacgatcagagtatttatggtttt
aggggggctgatatttctaacattttaaatttttccaagcattttaaaggggctaaggtg
gtgaaattagaaaccaactaccgctccagcgctgaaattttggcgtgcgctaactccctt
attagccataaccaacaccgccacaaaaaaacgcttcaaagttttaagggttcgcataaa
agcgtggtttgtaaggaatatttgacgcaaaaagaagagagcttagatgtggcttatcaa
atcaaagcccttttaaagaagggcgaaaatttagaaaatatcgctattttgtaccgctta
aacgggcttagccgcagcattgaagagagcttgaacgctttgaatatcccctataggctt
attggagcggtaagtttctatgaaagagcagaggttaaagacgctttggcgttcatgcat
ttagtggctaaaaaagacgatcgcttttttattaagcgcgttttaaacaagccctcaaga
ggccttggcaagatcactcaagaatggattttttctcttttagatggtgaaggtttgaat
ttagaagaagtgctaaaacttggggtgtttaaaggcaaattaaaccctaaaaacgaacac
gctttgaataaatttatcgctatgatagggcgtttgagggaggcttttgaaatttcagta
gaggagttttgcgctcggtttttagaagaaaccaaccttttaaaaagctatgaaaaagaa
gacaattacgaagaaagagagggctttgttaaagagcttttagctttagtgaaagagcat
tttaaaactaaccccacgcattctttattggattttttgaatgaaagcgttctggatacc
cataatacagaaaacgcgcaaaaagtgagttgcatgagcgtgcatatgagtaaggggtta
gagtttaagcatgtgtttgtgatcgggttagaagaagggtttttcccgcatagggggttc
aatcaagaaagcgatttggaagaagaaaggcgcttggcttacgtagcgatcactagggct
aaagaaggattgcagctctcttatgttcaagagcgttcgtattttgggaggaaaatttct
tgctcgccctctgtgtttttagaagaagccaagttgctcaagcaagacaacccccctaaa
caggatcacaaaaaagatacgcccattaaggtgggggatttgatcaggcataagattttt
ggcaccggtagggttttaggcgtagaaaaaggcttgagcggtttgtgcttgaaaatcaat
tgcggagggaatgtctatgataaaatctcagtaaaatttgtagaaaaagtggataacggg
ttttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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