KEGG   Herbaspirillum hiltneri: F506_16740
Entry
F506_16740        CDS       T04039                                 
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
hht  Herbaspirillum hiltneri
Pathway
hht03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hht00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    F506_16740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hht03019]
    F506_16740
   03016 Transfer RNA biogenesis [BR:hht03016]
    F506_16740
Enzymes [BR:hht01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     F506_16740
Messenger RNA biogenesis [BR:hht03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     F506_16740
Transfer RNA biogenesis [BR:hht03016]
 Prokaryotic type
  tRNA degradation factors
   F506_16740
SSDB
Motif
Pfam: RNase_PH RNase_PH_C PNPase S1 KH_1 KH_2 S1_2 KhpA-B_KH DUF5813 PCB_OB
Other DBs
NCBI-ProteinID: AKZ64096
Position
complement(3663437..3665569)
AA seq 710 aa
MFNKVTKTFQYGQHQVTLETGEIARQASGAVVVSIEDTVVLATVVARKDAKPGQDFFPLT
VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV
NPEIDPDIAAMIGASAALSIAGIPFNGPVGAARVGYIDGQYILNPTATQLKTSQLDLVVA
GTETAVLMVESEAKQLSEEIMLGAVVFGHDQSKAVINAIHELVRDGGKPEVEWTAPAKNE
PLIARVTELANDKLREAYQTKDKQARTAKLKTVTSDVNAALAADAAAAGTPAADAAEVGG
ILFDLEAKIVRSQILDGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT
LGTARDEQKIDALMGEYTDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL
PAADEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKEGSKF
AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRVHILG
KMQEAVPAGAGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV
TIASVDAGAGQEAKRRIEELTASVEVGKVYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA
NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAQEGTEAPASQDAQ
NT seq 2133 nt   +upstreamnt  +downstreamnt
gtgttcaataaagttactaaaaccttccagtatggacaacaccaggtcacgctggaaacc
ggcgaaatcgctcgccaggcttccggtgcagtcgtcgtttcgattgaagacactgttgtg
ctggcaacggtcgtggcccgcaaggatgccaagccaggtcaggactttttcccattaacc
gtcgattacatcgagaagacttacgctgcgggtcgcatccccggcggcttcttcaaacgt
gaaggcaagccttccgaaaaggaaacactgacatcgcgcctgatcgatcgcccgattcgt
ccgctgttccctgaaggttacctgaacgaagtgcaggtcatcatccacgttctgtccgtg
aatcctgaaatcgatccggacatcgctgcgatgatcggtgcgtcggcagcgctgtcgatc
gccggtattccgttcaacggcccggtcggcgccgcacgcgtcggttacatcgacggccag
tacatcctgaacccgacagcaacgcaactgaagacgtcgcaactggatctggttgtcgcc
ggcaccgaaaccgccgtgctgatggtcgaatccgaagccaagcaattgtccgaagaaatc
atgctgggcgcagtcgtgttcggtcacgatcaatcgaaggcagtcatcaacgcgatccac
gaactggtgcgcgacggcggcaagcctgaagtcgaatggacggctcctgccaagaacgaa
ccgctgatcgcccgcgtcaccgaactggccaacgacaagctgcgtgaagcctaccagacc
aaggacaagcaagcgcgcaccgccaagctcaagaccgtcacttccgacgtcaatgcagcg
ctggcagccgatgctgccgctgccggcaccccggcggcagatgcggccgaagtcggcggc
atcctgtttgacctggaagccaagatcgtccgctcgcaaatcctcgacggcgaaccacgc
atcgacggccgcgatactcgcaccgtgcgtccgatctcgatccgcaccggcgtgctgcca
cgcacccacggttcggcattgttcacccgcggtgaaactcaggcgctggtcatcgcgacc
ctgggtactgcacgcgacgaacaaaagatcgacgcgctgatgggcgagtacaccgaccgc
ttcatgcttcactacaacatgcctccgttcgcgaccggcgaaaccggccgcgttggtacg
ccaaagcgccgcgaaatcggacacggccgtctggccaagcgcgcgctgatcgccgccttg
ccggcagctgacgagttcagctactcggtgcgtctggtgtcggaaatcactgaatccaac
ggttcctcgtcgatggcttcggtctgcggcggctgcctggcattgatggacgccggcgtg
ccgatgcaggcacacgtggccggtatcgccatgggcctgatcaaggaaggcagcaagttc
gccgtcctgaccgatatcctgggcgacgaagatcacctcggcgacatggacttcaaggtg
gcgggtactgccaacggcatcaccgcactgcaaatggacatcaaaatccagggcatcacc
aaggaaatcatgcaggtcgcgctggaacaagccaaggaaggccgcgtgcacatcctcggc
aagatgcaggaagccgttccggccggcgcaggcgaactgtccgacttcgctccacgcctg
atcaccatcaagatcaatccggaaaaaatccgtgacgtgatcggcaagggcggcgcagtc
attcgcgcgctgaccgaagaaaccggcacacagatcgacatcagcgacgaaggcgtggtc
accatcgcttccgttgacgctggtgcaggccaggaagccaagcgccgcatcgaagaactg
accgcttccgtcgaagtcggcaaggtctacgaaggcaccgtcctgaagctgctggacttc
ggtgcgatcgttcaggtcctgccaggcaaagatggtttgctgcacatcagccagatcgct
aacgagcgcgtcaacgccgttgccgattacctgaaggaaggccagcaagtccgcgtcaag
gttctggaaaccgacgaccgcggccgtctgaaactgtcgatgaaggccgcgcaagaaggc
acggaagcgcctgcttcgcaagacgcgcagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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