KEGG   Haemophilus influenzae PittGG (nontypeable): CGSHiGG_03880
Entry
CGSHiGG_03880     CDS       T00544                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
hiq  Haemophilus influenzae PittGG (nontypeable)
Pathway
hiq03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hiq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CGSHiGG_03880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hiq03400]
    CGSHiGG_03880
DNA repair and recombination proteins [BR:hiq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CGSHiGG_03880
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      CGSHiGG_03880
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N AAA_16 AAA_29 nSTAND1 RsgA_GTPase AAA_21 nSTAND3 Viral_helicase1 AAA_23 AAA_25 NACHT DnaJ_CXXCXGXG APS_kinase cobW Zn_Tnp_IS1595
Other DBs
NCBI-ProteinID: ABQ99755
UniProt: A5UG50
Position
complement(735942..738773)
AA seq 943 aa
MENIDIRGARTHNLKNINLTIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRSYVESLSAY
ARQFLSLMEKPDVDSIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC
PDHDVPLTAQTISQMVDKVLSLPEDSKMMLLAPVVKNRKGEHLKILENIAAQGYIRARID
GEICDLSDPPKLALQKKHTIEVVVDRFKVRSDLATRLAESFETALELSGGTAIVADMDNP
KAEELVFSANFACPHCGYSVPELEPRLFSFNNPAGACPTCDGLGVQQYFDEDRVVQNPTI
SLAGGAVKGWDRRNFYYYQMLTSLAKHYHFDVEAPYESLPKKIQHIIMQGSGKEEIEFQY
MNDRGDVVIRKHPFEGILNNMARRYKETESMSVREELAKNISNRPCIDCGGSRLRPEARN
VYIGKTNLPIIAEKSIGETLEFFTALSLTGQKAQIAEKILKEIRERLQFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRNLGNT
VIVVEHDEDAIRAADHIIDIGPGAGVHGGQVIAQGNADEIMLNPNSITGKFLSGADKIEI
PKKRTALDKKKWLKLKGASGNNLKNVNLDIPVGLFTCVTGVSGSGKSTLINDTLFPLAQN
ALNRAEKTDYAPYQSIEGLEHFDKVIDINQSPIGRTPRSNPATYTGLFTPIRELFAGVPE
ARARGYNPGRFSFNVRGGRCEACQGDGVLKVEMHFLPDVYVPCDQCKGKRYNRETLEIRY
KGKTIHQVLDMTVEEAREFFDAIPMIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKL
ATELSKRDTGKTLYILDEPTTGLHFADIKQLLEVLHRLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGQIIATGTPEQVAKVESSHTARFLKPILEKP
NT seq 2832 nt   +upstreamnt  +downstreamnt
atggaaaatatcgatattcgcggggctagaacccataacctgaaaaatattaatttaact
attccacgcaataaacttgtggtgattactgggctttcaggttcgggaaaatcctcttta
gcctttgatacactttatgcggaagggcaacgcagctatgttgaatctctttcggcgtat
gcacgccagtttttatctttaatggaaaagcctgatgtggattctattgagggactttcc
cctgcaatttcgattgaacaaaaatctacctcacacaatccacgttctacggtgggaaca
attacggaaatttatgattatttacgtttattgtttgcacgagtaggggagccacgttgt
ccagatcatgatgttccattaacggcacaaacgattagtcaaatggtggataaagtatta
agtttgccagaagatagcaagatgatgttacttgcaccagttgtcaaaaatcgaaaaggc
gaacatctcaagattttagaaaatattgctgcgcaaggttatattcgtgcgcgtattgat
ggcgaaatttgcgatttatctgatccgccaaaattagccttacagaaaaaacatactatt
gaagtagtggttgatcgttttaaagtgcggtcagatttagcaacacgtttagccgaatct
tttgaaaccgcattagagctttcaggtggcactgcgattgtggcagatatggataatccg
aaagcagaagaattagttttttcggcaaattttgcttgtccgcattgtggttattctgtg
ccagaattagagcctcgtttgttttcctttaacaatcctgcaggtgcttgcccaacttgt
gatggcttgggtgtgcagcaatattttgatgaagatcgtgtggtacaaaatccaactatt
tctcttgctggtggtgcggtaaaaggttgggatcgtcgtaatttctattattatcaaatg
cttacatcattggcgaaacattatcattttgatgttgaagccccttatgaatctttgcca
aagaaaattcaacacatcattatgcagggctcaggaaaagaggaaattgaattccaatat
atgaatgatcgtggcgatgtggttattcgcaagcatccttttgaagggattttgaataat
atggctcgccgatataaagaaacggaatcaatgtcggtgcgtgaagaattagcgaaaaat
attagcaatcgaccttgtatagattgtggcggctctcgtttgcgacccgaagcgcgtaat
gtgtatattggaaaaaccaatttgccgataattgcggaaaaaagcattggcgaaaccctt
gaattttttaccgcactttctctcactggtcaaaaagcgcaaattgcggaaaaaattctt
aaagaaatccgcgagcgtttgcagtttttagtcaatgttggtttgaattatctttctctt
tctcgttctgctgaaactctttcaggtggggaggcgcaacgtattcgccttgcgagtcaa
attggtgcgggacttgttggcgtaatgtacgtattagatgaaccctctattggcttgcac
caacgtgataatgaacgcttacttaatacgttaattcatttgcgtaatcttggtaatacg
gtaattgtcgtggagcacgatgaagacgcgattcgtgcagctgaccatattattgatatt
gggcctggtgctggcgtgcatggcggacaagttattgcgcaaggaaatgccgatgaaatt
atgctcaatccaaattccatcacaggaaaatttttatcgggtgcagataaaatcgaaatc
ccgaaaaaacgcaccgcacttgataagaaaaaatggctcaaacttaaaggcgcatcaggt
aataacttaaaaaatgtgaatttagatattcccgttggtttgtttacttgcgtaactggt
gtgtctggttcaggaaaatccacacttattaatgacaccttatttccacttgcgcaaaat
gcgttaaatagagcggaaaagacggattacgcaccttatcaatctatcgagggattagaa
catttcgataaagttattgatattaaccaaagcccgattgggcgtacgccacgttcaaat
ccagccacttatacaggcttatttaccccaattcgcgagctttttgcaggggtgccagag
gcacgtgcgcgcggttataatcctgggcgttttagctttaacgtacgaggtggacgctgt
gaagcctgtcagggcgatggtgtactcaaagttgaaatgcactttttgcctgatgtttat
gttccttgcgatcaatgtaaaggtaaacgctataatcgcgaaaccttagaaattcgttac
aaaggcaaaacgattcatcaagttttagatatgacggtggaagaagctcgcgagtttttt
gatgcgattccaatgattgcaagaaaattacaaaccttgatggatgtgggattatcctat
attcgattaggtcaatcttccacaacactttcaggcggcgaagcacaacgcgtgaaacta
gcaacggaactttctaaacgtgatacgggtaaaactttgtatattctagatgaaccgacg
actggtttgcatttcgctgacattaagcaattacttgaagtattgcatcgattacgcgat
caaggaaatactatcgtcgtcattgaacacaatcttgatgtgattaaaaccgcagactgg
attgtcgatcttggcccagagggaggcagtggcggcggacaaattattgcgacgggtaca
ccagagcaagttgccaaagtagaaagttcccacaccgctcgcttccttaaaccgatttta
gaaaaaccttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (18)   
   Pfam (18)   
All databases (26)   

Download RDF
DBGET integrated database retrieval system