KEGG   Heterobasidion irregulare: HETIRDRAFT_60852
Entry
HETIRDRAFT_60852  CDS       T03455                                 
Name
(RefSeq) putative exoribonuclease
  KO
K12585  exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
hir  Heterobasidion irregulare
Pathway
hir03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HETIRDRAFT_60852
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hir03019]
    HETIRDRAFT_60852
Messenger RNA biogenesis [BR:hir03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     HETIRDRAFT_60852
SSDB
Motif
Pfam: RNB Rrp44_S1 Rrp44_CSD1 OB_Dis3 PIN_4 CSD2 IQCJ-SCHIP1
Other DBs
NCBI-GeneID: 20678525
NCBI-ProteinID: XP_009541856
JGI: Hetan2_60852
UniProt: W4KJN5
Position
Unknown
AA seq 998 aa
MVQVTIRKRPIEDAVITQRKFFKKTARGKVIKVIRERYLRDDVSCGIEGCRECSTSADTA
LPVNGTLDHKLFPNGHFILPDTNVFLAQMDLMESSLFTSPIILLQTVLEEVRHRSLPLYN
RLKALVKLDEKRTWVFYNEFRSETAVVRENGETPNDRNDRGIRKGTAWYNSHLSLTRPVI
RGQTAPSIPTVVLLTDDVANRQKAEKEGIQCLSVRSYVEGMPKATELLDLLSVAGSNDLE
PTVASGRTVLYPDYLPSGALIAGIKAGQLHQGHFNANQYNYLEGSIMVTGFEKPVLLIGR
EHMNRSVQGDVVVIEVFDEKEWKAPADQVVDQEVTLKNDDVEDSDKGEDNDALIDERRAL
KREESKTPNAEKQPTGRVVGIIKRNWRAYVCHIDSTSLTSSNPTSLSQQTVFATPVSRLL
PRIRMRTRQAPSLIGQKILVTIDKWDSTSRYPEGHFVRSLGKVESKEAEQESLLLEFDVP
YRPFGKAILDCLPPEGDRWVVPPKSSLSPEWRDREDLRNLIICSIDPPNCQDIDDALHAR
RLSNRNIEAGVHIADVSHFVLPDNPMDSEAASRGTTVYLVDKRIDMLPALLGTNLCSLRP
HVERLAFSCIWELTPEAEIVNVRFTKSVIASKSAFTYEEAQIRKDDPSLNDELTESLRLL
NMLARKLKEGRMAAGALNLASPEVKIHMDSAESSDPVDVEQKELRETNSLVEEFMLLANI
SVARKIQETFPQTAVLRRHLPPPKSNFEKLQDILKKRRGLSLDVSSSGALAASLDKCTDP
DEPAFNTLVRIMATRCMLSAEYFCSGSVSSETFGHYGLASSIYTHFTSPIRRYADVLAHR
QLSAAIGYSPLHASLHTKSHVERVLDVVNRRHRMAQMAGRASVEFYVGLALKSRGEKSHK
TGGGQVTEEAFVIRTFRNGLGVFVSKLGIEGLVLFKRETQFDADNYTVTVPSTKTGGKEV
EIAVFDKVTVSIEVEKDKNTQRGRVKMTLVSPVDSSAL
NT seq 2997 nt   +upstreamnt  +downstreamnt
atggtccaagttactatcaggaagcgccccattgaggatgcggtcatcacccagcggaag
ttcttcaagaagactgcaaggggaaaagtcattaaagtcataagggagagatatctgagg
gatgatgtgtcctgtggtatagagggctgtagagagtgttctacctcggccgacactgct
ttgccagttaatggcaccttagatcacaaactatttcccaacggccatttcattttgcca
gacaccaacgtatttctagctcagatggatctcatggaatccagtctgttcacctccccc
atcatccttctgcagacggtcctcgaagaagtccgccatcgctctttaccattatacaat
cgcttgaaggcacttgtgaagctggatgaaaagcggacatgggtcttctacaatgaattt
cgatcagagacagctgttgtgcgtgaaaatggggagacacccaatgaccgtaacgatcga
ggcatccgcaagggaactgcttggtataactctcatctctcactcacacgccctgtcatc
cgcggccaaaccgctccttcaattccaacggttgtactcctcactgatgatgtagccaac
cgccaaaaagcggaaaaggaaggcatccagtgcttgtcagtccgttcatacgtggaggga
atgccaaaagcaaccgagttgcttgaccttctatcggtggcagggtccaacgatcttgag
ccaacggttgcgtccggtcgcactgtcctatacccagattatctgccttctggtgctttg
attgcaggcatcaaagccggccaattgcatcaaggacacttcaacgctaatcaatacaat
tacttagagggcagtatcatggtgacaggatttgagaagcctgtcctactaattggtcga
gaacacatgaaccgctctgtacaaggtgatgtcgttgttattgaagtcttcgacgagaag
gagtggaaggctcctgcggatcaagtagttgaccaagaagtcacattgaagaacgatgat
gtcgaggactcagacaaaggagaggacaatgatgccttgatagatgagcggagagcgctc
aaaagagaggagtccaaaacgcccaatgcggagaaacagccaacgggtcgtgtggttggc
attatcaagcgcaactggcgggcatacgtttgccacattgatagcacctcgttgacctca
tcaaaccccacttctctgtcgcaacagacggtctttgcgacgccggtctctcgacttctt
ccaaggatccgcatgcgtacgaggcaggctccctctcttatagggcaaaagatcctcgtc
actatcgataaatgggatagcacctcgcgttacccagaaggccacttcgtgcgatcgcta
ggcaaagtagaaagcaaagaagcggagcaggagagtctgttgttggagttcgacgttcca
tatcggccatttgggaaagcaatcctagactgcctgcctcccgagggagatcgctgggtc
gttcccccgaagagcagtttgagccccgagtggagggaccgagaggatctgcggaatttg
atcatatgcagcatcgatcccccaaattgtcaagacatagatgatgcactgcacgctcgt
cggctttcgaacagaaatatcgaggcaggagtgcatatcgctgatgtgtcgcatttcgta
cttccggacaatccaatggacagtgaagcagcgtctagagggactacggtgtaccttgta
gacaagcgaattgacatgctaccagccctgctgggaaccaatctgtgctcccttcgtcct
catgtagagcgcttagctttttcttgtatctgggaactcacccctgaagccgagattgtc
aatgttcgcttcacaaagtccgtcattgcctcaaaatctgccttcacgtatgaagaggca
cagattcgcaaggatgatccgagcctcaatgacgagttgacggagagccttcgattgctc
aatatgctcgcgcgtaaactcaaagaggggcgcatggctgcgggcgcactgaacctagca
tctccagaggtcaaaatccacatggatagcgctgagtcgtcagaccccgtcgatgtagag
caaaaagaactgcgggaaacgaacagcctcgttgaggaattcatgcttcttgccaatatc
agcgtagctcgaaaaatacaggagacgttcccacagaccgctgtgctcagacggcatctt
cccccaccgaaatcaaatttcgagaagctccaagatatcttgaaaaaaaggcgaggattg
tcccttgatgtttcgagttctggagcattggcggcctccctagataagtgcacagacccc
gatgagccagcatttaataccctagtgcgcattatggcgacacgctgcatgctctccgca
gagtatttctgctcaggcagtgtatcttccgagacgttcggtcactatggtttagcaagc
tccatttacacacacttcaccagtcctattcggcgttacgccgatgtacttgcccatcgc
cagctttccgccgccatcggctattccccccttcatgcctccttgcacactaaatcgcat
gtagaacgggtcctggacgttgtaaaccgaaggcacaggatggcacagatggcaggccga
gcaagtgttgagttctatgtcggattggcgctcaaatcccgtggagagaagtctcacaaa
actggcggcggtcaagtgacggaagaagcattcgttatcagaacgtttaggaatggtctc
ggggtttttgtttccaaacttggaatcgaaggtctggtgcttttcaagcgggaaactcag
ttcgacgcagataactatactgtaactgtcccttcgactaagactggcggcaaggaggtg
gagattgcggttttcgacaaggtgacagtgagcatagaagtggaaaaggacaagaacaca
cagcgaggaagagtgaagatgacactcgtcagccccgtggactctagcgcgttgtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (42)   

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