KEGG   Halobacillus litoralis: HLI_08470
Entry
HLI_08470         CDS       T05828                                 
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
hli  Halobacillus litoralis
Brite
KEGG Orthology (KO) [BR:hli00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:hli03009]
    HLI_08470
Enzymes [BR:hli01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     HLI_08470
Ribosome biogenesis [BR:hli03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    HLI_08470
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 Cons_hypoth95 Met_10 MTS Methyltransf_15 N6_N4_Mtase Methyltransf_25 PrmA Methyltransf_4 Methyltransf_32 UPF0020 Methyltr_RsmB-F Ubie_methyltran TRAM Methyltransf_11 PCMT DUF5428
Other DBs
NCBI-ProteinID: QAS52262
UniProt: A0A410MBX9
Position
complement(1665408..1666868)
AA seq 486 aa
MSKRKSLGYKKSKNKPKRSEKSYGKQNKSRNNERKGKSQRSKNAVTAEVTCSGLTNEGKG
IAEWKGKQLEVPLLLPGEKAEVNVFQKGSLVNAELKRVITSAEERVDPPCPYYYECGGCQ
LQHMSNQAQSRFKQETVDTLMKPFVKPEPIMTMDHPYDYRNKNHTTFGLNHKREVIGGLY
GPHTHEIIPIDKCLIHDPKADEIAGTLKDYMKNTKMQPYNEDTGRGFLRHVLIKVGKVSG
EIMVVLVAASSEFKGKKNFVKTLRKAHPEITTMLLNVNKRDTSIVLGNQEDVLFGKGTIT
DTLCGLKFEISAKSFYQINPVQTEKLYGKAIEMAGLTGKETVIDAYCGIGTIGLVASQKA
RKVIGVEMNKDAVKDAIRNSKRNGVKNARFYQGDAGEFMVEMAERGDKADVVIMDPPRSG
SDEAFLSSVVKLKPKRIVYVSCNPETQVRDLKYLVKNGYEVEGIQPVDMFPQTYHVESVA
KLVLKN
NT seq 1461 nt   +upstreamnt  +downstreamnt
atgagtaaacgaaaaagtcttggatataagaaatccaaaaataaacctaaacgttctgaa
aaatcatatgggaaacaaaacaaatccagaaataacgagcgcaaaggcaagtctcaacgc
agtaagaacgctgtaaccgctgaggtgacatgttcgggtttgaccaatgaaggcaaaggc
attgccgagtggaaagggaagcagctggaagtgccacttcttttgcctggtgaaaaggcg
gaggtgaatgtctttcaaaaagggagtttggtgaacgcagagttgaagcgtgttatcact
tcagcagaggaacgggtcgatccaccgtgtccgtattattacgagtgcggcggatgccag
ctccagcatatgagcaatcaggcgcaatcgcgtttcaagcaggaaacagtagataccttg
atgaagccgttcgtaaagcctgaacctattatgacaatggatcacccgtatgattaccgt
aataagaaccacacgacattcggcttgaatcacaagcgagaggtgattggcgggctgtat
ggaccgcacacccatgaaatcatcccgattgataagtgtctcattcacgatccgaaagcg
gatgagatcgcagggacgctcaaggactatatgaaaaacactaaaatgcagccgtataac
gaagatactggacgggggtttttgcggcacgtattgattaaagttggtaaagtcagcggg
gaaatcatggtggtgctggtcgccgcatcctctgagttcaaggggaaaaagaattttgtg
aaaactttacgaaaagcccaccccgaaattacgacaatgctgctgaatgtgaataaacgg
gacaccagcatcgtgctgggcaatcaggaggacgtattattcggcaaaggaacaatcaca
gatactttatgtggactgaaattcgagatatcagcgaaatctttctatcagatcaatcca
gtccagacggagaagttatatggaaaagcgattgaaatggctgggttgactggcaaggaa
accgtaatcgatgcctactgcgggatcggtacgattggtctggttgccagccagaaagca
agaaaggttattggcgtagagatgaataaagatgcggttaaagacgccatccgaaattcg
aaacgtaacggtgtgaaaaatgcccgcttctaccagggtgatgccggggaattcatggtg
gaaatggcagaacgcggagataaagcggatgtggtaattatggatccgccgagaagcggg
agtgatgaagcattcttatcaagcgttgtgaagcttaagccgaagcggatcgtgtatgtt
tcctgtaatccggaaacacaagtacgggatttgaaatacttggtgaagaatgggtatgag
gttgaaggaattcagccagtggatatgtttccacagacttatcatgtagaatcagttgca
aagttagtgctcaaaaactga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (18)   
   Pfam (18)   
All databases (26)   

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