KEGG   Halobacillus litoralis: HLI_13265
Entry
HLI_13265         CDS       T05828                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
hli  Halobacillus litoralis
Pathway
hli03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:hli00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HLI_13265 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hli03400]
    HLI_13265 (ligD)
Enzymes [BR:hli01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HLI_13265 (ligD)
DNA repair and recombination proteins [BR:hli03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HLI_13265 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M DNA_primase_S DNA_ligase_A_C
Other DBs
NCBI-ProteinID: QAS54650
UniProt: A0A410MIY5
Position
complement(2573817..2575763)
AA seq 648 aa
MSLFSVAACSFTGILTRPKLIVPFHMVCIADTPFSLVFHGSHKICSISLGQTKKKRVLRR
KNVMKPMLLSSTAELPKGKEWIYEMKYDGFRAILEVTPSDIKLWSRNGKELSAHFPEITN
WKFPQSCLPLKIDGEIVILNTLYQANFPLLQMRGRMRNKEKIQRHAEERPATLLAFDILE
DLKSPLSNRKQRLRTVLEKISHPHIREIETFTNPEEIQEKALLHLAEGIAAKSISSPYRP
GERVLHWLKWKQWRSVSGFLISYDPENGYYDAATENNQTQELLGRFKHGLSGEESKTLRN
FFKDKGYKKKGKWHLEPSICVDIHCLNAQGGDLREPYFHQFRFDLSPAECTSEKLEWDLA
IFPDDFEPTHTSKKLWPEVTKEDYLLYIRKAAPYILPFISKKKLTLIRYPDGIDQDSFFQ
KHYPDHAPGFLKEWKENAEKFMMCNNLSSLVWLANQGALEFHIPFEKAGAASPDEIVLDL
DPPDRDHFHLAVTASRLLKHVLDELEVVSFIKTSGNKGMQIHIPIKEGDFSYEETRQITE
ALAALLVNEEPELFTTERLKKNRGVRLYIDYVQHAEGKTIIAPYSTRATDRASVAAPLYW
SEVKEGLTPETFNIHSIIERVHQKGCPFREYENARDKQPVSKLKKLIQ
NT seq 1947 nt   +upstreamnt  +downstreamnt
atgtctttattttcggtagcagcgtgtagcttcactggtatattgacaaggccgaaactg
atcgtacccttccacatggtgtgcatagcggacactcctttttctctagtttttcacgga
tctcataaaatatgttccatttcacttggacaaactaaaaaaaaacgcgttctaaggagg
aaaaacgttatgaaacccatgttactctcctctactgccgaacttcccaaaggaaaagaa
tggatctatgaaatgaaatacgatggattccgggcaatactggaagttactccatctgac
attaagctctggagtcgtaacgggaaggagttaagtgctcattttcctgaaatcaccaat
tggaaattcccccagtcatgtctcccgcttaaaattgacggggaaatcgtcatactgaat
acactctatcaggcgaacttccccctcttacagatgagaggccggatgaggaacaaagag
aaaattcaaagacacgcggaggaacgcccagctacgctgcttgctttcgacatccttgaa
gatttgaagtcccccctttcaaacagaaaacagcgactcaggacggtacttgagaaaatc
agccatccacacatcagggaaattgaaactttcacaaaccctgaggagatccaggagaaa
gctcttcttcacctcgcagaaggaattgcagctaaatcaatctccagtccttaccgaccc
ggtgaaagagtcctacattggttgaagtggaagcaatggcggtccgtttccggcttcttg
atcagctacgatcctgagaacggttattatgatgcagccaccgaaaataatcagacacag
gaactactgggacgtttcaagcacggattatctggagaggaatcaaaaaccctgcgcaac
tttttcaaagacaaggggtataagaaaaaggggaagtggcatttggaaccaagcatctgt
gtcgacattcactgtctgaatgctcaaggtggggacttacgtgagccttacttccaccag
ttccgtttcgatctttcccccgcagaatgtacatctgaaaagctggaatgggacctggcc
atttttccagacgattttgaacctacccacacctctaaaaaactttggcctgaggtgaca
aaagaagattatttactatatataagaaaggcagctccttacatcctcccattcatcagc
aagaagaaacttacgcttatccgctatcctgatgggattgatcaagactctttttttcaa
aaacactaccccgatcatgcgccgggttttttgaaggaatggaaagaaaacgcggagaaa
ttcatgatgtgtaataacctttcctcgctcgtatggctggcgaatcaaggagcccttgag
tttcatatcccatttgaaaaagcaggagcggcctctccggatgaaatcgttctggatttg
gacccgcccgatcgagaccacttccatctagcagtcacagcttcccggttactcaaacac
gtccttgatgaactagaagtggtcagctttatcaaaacctctggtaataaaggaatgcag
attcatataccgataaaggaaggagatttcagttacgaagaaacacggcaaatcacagaa
gcactcgcggctttacttgttaacgaggaaccagaactttttactaccgagagactgaag
aagaatagaggggtgcgtctttatattgattacgtccaacatgccgaagggaaaacgatt
atcgctccctactctacacgtgcaacggatcgtgcttctgtggcagccccgttgtactgg
tcagaagtaaaagagggtttgacacctgaaacgttcaacatccattcgattattgaaaga
gtccaccaaaaagggtgccccttccgtgagtatgaaaacgcgagggacaaacaacccgta
tcaaaacttaaaaaattaattcaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

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