KEGG   Halobacillus litoralis: HLI_14350
Entry
HLI_14350         CDS       T05828                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
hli  Halobacillus litoralis
Pathway
hli03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hli00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HLI_14350 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hli03021]
    HLI_14350 (rho)
   03019 Messenger RNA biogenesis [BR:hli03019]
    HLI_14350 (rho)
Transcription machinery [BR:hli03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     HLI_14350 (rho)
Messenger RNA biogenesis [BR:hli03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     HLI_14350 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB Spore_III_AA AAA_22 AAA ATPase_2 AAA_25 AAA_24
Other DBs
NCBI-ProteinID: QAS53287
UniProt: A0A410MF18
Position
2819931..2821220
AA seq 429 aa
MADITISNLETMTLKGLYAKARQYKVSYYAKLTKRELIFAILKAQAEKDGFLFMDGILEI
IPSEGFGFLRPINYSPSAEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVDA
VNGEDPDSAKERVHFPALTPLYPDRPIKLETETKKLSTRIMDLMAPVGYGQRGLIVAPPK
AGKTMLLKQMANSISTNQPDAKLIILLVDERPEEVTDIERSVAPDVDVVSSTFDEVPENH
IKVSELVLERAMRLVEHKRDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKR
FFGAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAID
ILRSGTRKEELLLSQAHLDKVWAIRKTMSDAHDFSDRFLRRLRSSKNNEEFFDLMDKDMK
GKATPARRS
NT seq 1290 nt   +upstreamnt  +downstreamnt
gtggcagatataactatctccaatttagaaacaatgacactgaaaggtctttatgcaaag
gctagacagtataaagtatcttactatgcgaaacttacgaaaagagaattgatttttgca
atcttgaaggctcaagctgaaaaagatggctttttatttatggacgggattttggagatt
attccttctgaagggtttggcttcctgcgtccgatcaactattctccgagtgcggaagac
atttacatctcagcctctcaaattcgtcgctttgacctgaggaatggggataaagtttcc
ggaaaagtccgtcctccgaaagaaaatgagcgttattacgggttgctccacgtagatgca
gtgaatggggaggacccggactctgccaaggaaagagtacacttcccggcacttactcct
ctttatccggaccgtcccataaaacttgagaccgagacaaaaaaactgtctactcgaatc
atggatctcatggctcctgtagggtacggacaacgtggactcattgttgctcctccaaaa
gcagggaaaacgatgttgttaaagcagatggccaacagcatatccaccaatcagcctgat
gcgaaattgattattttacttgtggatgagcgtccggaagaagtgacggacattgaacgt
tctgtcgcccctgatgttgatgtagtcagctcgacttttgatgaagtgccggaaaatcat
attaaagtttcagaacttgtgttggagcgagccatgcgtttagttgaacacaagcgtgat
gtcatcatattgatggatagcattacaagactagcaagagcttacaacctggtcatccct
ccgagtggacgtacactttcaggagggattgacccagcggctttccaccgtccgaaacgt
ttcttcggtgcagctcggaatatcgaagaagggggaagcttgacgattttagctactgcc
cttgtagatacaggctcacgtatggatgacgtcatctatgaagaatttaagggaactgga
aatatggaactgcatctggaccgcagtttggccgaacgccggatttttcctgccatcgat
atattgcgttcaggtacacggaaagaagagctgctgctgtcccaggctcaccttgataaa
gtttgggcgatccgtaaaacgatgtcagatgcccatgatttctcagatcgcttcctacgc
cgtttgagatcgtcaaaaaataatgaagaatttttcgatttaatggacaaggatatgaaa
gggaaagcgactcctgcacggcgttcgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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