KEGG   Hyphomicrobium sp. MC1: HYPMC_4522
Entry
HYPMC_4522        CDS       T01557                                 
Symbol
lpd
Name
(GenBank) dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
hmc  Hyphomicrobium sp. MC1
Pathway
hmc00010  Glycolysis / Gluconeogenesis
hmc00020  Citrate cycle (TCA cycle)
hmc00260  Glycine, serine and threonine metabolism
hmc00280  Valine, leucine and isoleucine degradation
hmc00310  Lysine degradation
hmc00380  Tryptophan metabolism
hmc00620  Pyruvate metabolism
hmc00630  Glyoxylate and dicarboxylate metabolism
hmc00640  Propanoate metabolism
hmc00785  Lipoic acid metabolism
hmc01100  Metabolic pathways
hmc01110  Biosynthesis of secondary metabolites
hmc01120  Microbial metabolism in diverse environments
hmc01200  Carbon metabolism
hmc01210  2-Oxocarboxylic acid metabolism
hmc01240  Biosynthesis of cofactors
Module
hmc_M00009  Citrate cycle (TCA cycle, Krebs cycle)
hmc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
hmc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:hmc00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    HYPMC_4522 (lpd)
   00020 Citrate cycle (TCA cycle)
    HYPMC_4522 (lpd)
   00620 Pyruvate metabolism
    HYPMC_4522 (lpd)
   00630 Glyoxylate and dicarboxylate metabolism
    HYPMC_4522 (lpd)
   00640 Propanoate metabolism
    HYPMC_4522 (lpd)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    HYPMC_4522 (lpd)
   00280 Valine, leucine and isoleucine degradation
    HYPMC_4522 (lpd)
   00310 Lysine degradation
    HYPMC_4522 (lpd)
   00380 Tryptophan metabolism
    HYPMC_4522 (lpd)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    HYPMC_4522 (lpd)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:hmc04147]
    HYPMC_4522 (lpd)
Enzymes [BR:hmc01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     HYPMC_4522 (lpd)
Exosome [BR:hmc04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   HYPMC_4522 (lpd)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 NAD_binding_8 FAD_oxidored FAD_binding_2 HI0933_like DAO GIDA Thi4 FAD_binding_3 Lys_Orn_oxgnase AlaDh_PNT_C 3HCDH_N Amino_oxidase
Other DBs
NCBI-ProteinID: CCB67731
UniProt: F8JD04
Position
complement(4350383..4351783)
AA seq 466 aa
MAAYDLIVIGTGPGGYVCAIRAAQLGMKVAVVEKRATFGGTCLNIGCIPSKSMLHASHCY
DEAKHEFASMGIGTDPALDLAKMQAFKREGVKGNTDGVAYLLKKNKIDHHFGTGRIVKSG
QVAVTSPGGDTQTLETKSIVIATGSDVTRLPGIEIDEKRVVSSTGALDFETVPKKLLVVG
AGVIGLELGSVWRRLGSEVLVIEYLPRILPGMDAEVAKSFQRILEKQGIAFRLSSKVAGV
ETSDTGVVAKVEPAAGGVAETVDADAVLVAVGRVPYTEGLGLAEAGIALDAKKRVLVDGH
YQTNVTGVFAIGDVIAGPMLAHKAEDEGVAVAEIIAGQAGHVNYDVIPSVIYTSPEVASV
GKTEEELKAAGIAYNVGKFPFTANGRAKAINQTAGFVKILADATTDRVLGVHIIGAVAGE
LIAEACVLMEFSGSAEDLARTCHAHPTFSEAMKEAALAVAKRAIHF
NT seq 1401 nt   +upstreamnt  +downstreamnt
atggccgcatatgatctgattgttatcggcactggccccggcggttacgtgtgcgccatc
cgcgccgcccagctcggaatgaaagtcgccgtcgtcgagaagcgcgcaacctttggcggc
acctgcctcaacatcggctgcatcccgtcgaagtcgatgcttcacgcgtcacattgctat
gacgaggccaagcacgaattcgcgtcgatgggcatcggcaccgatcccgcgctcgatctc
gccaagatgcaggcgttcaagcgcgaaggcgtcaaaggcaacacagacggcgtcgcctac
cttttgaaaaagaacaagatcgatcatcacttcggcaccggccgcatcgtgaagtccggt
caggtcgcagttacctcacccggcggtgacacgcagacgcttgaaacaaaatcgatcgtc
atcgcgacgggctccgacgtgacccgcctgccgggcatcgagatcgacgagaagcgcgtc
gtctcgtcaaccggagcgctcgacttcgagaccgtgccgaaaaagctgctcgtcgtcggc
gcgggcgtcatcggacttgagctgggctctgtctggcgtcgtctcggctcggaagttctc
gtcatcgaatatctgccgcgcattctgcccggcatggacgccgaggtcgcaaagtcgttc
cagcgtattctcgaaaagcagggcatcgcattccgcctgtcgagcaaggttgcgggcgtc
gaaacatccgacaccggcgttgtcgccaaggtcgaaccggcggcgggcggcgttgccgaa
acggtcgatgccgacgccgttctcgttgccgttggccgcgtgccctacaccgaggggctg
ggcctcgccgaagccggcatcgcgctggacgccaaaaaacgcgtgctcgtcgatggccac
tatcagaccaacgtcaccggcgtttttgccatcggtgacgtgatcgccggaccgatgctc
gctcacaaggcggaggacgaaggcgtcgccgtcgccgagatcattgccggtcaggcgggg
cacgtgaactacgacgtgatcccgagcgtcatctatacaagtccggaggtcgcgagcgtc
ggcaagacggaagaagaactgaaggccgcgggcatcgcctacaacgttggcaagtttccg
ttcaccgccaacggccgcgccaaggcgatcaatcagacggcgggcttcgtgaaaatcctg
gcggatgcgacgaccgatcgcgtgctcggcgtccacatcatcggcgccgtcgcaggcgaa
ttgatcgccgaagcatgcgtgctgatggaattctcaggctcggccgaagatctggcgcgc
acttgccacgcgcatccgactttctccgaagcgatgaaagaagccgcccttgccgtcgcc
aagcgcgcgattcatttctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (23)   
   KEGG PATHWAY (16)   
   KEGG MODULE (7)   
Chemical substance (27)   
   KEGG COMPOUND (27)   
Chemical reaction (11)   
   KEGG ENZYME (1)   
   KEGG REACTION (10)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (85)   

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