KEGG   Haloferax mediterranei: HFX_0176
Entry
HFX_0176          CDS       T02129                                 
Symbol
dnaN
Name
(GenBank) DNA polymerase sliding clamp
  KO
K04802  proliferating cell nuclear antigen
Organism
hme  Haloferax mediterranei
Pathway
hme03030  DNA replication
hme03410  Base excision repair
hme03420  Nucleotide excision repair
hme03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hme00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HFX_0176 (dnaN)
   03410 Base excision repair
    HFX_0176 (dnaN)
   03420 Nucleotide excision repair
    HFX_0176 (dnaN)
   03430 Mismatch repair
    HFX_0176 (dnaN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hme03032]
    HFX_0176 (dnaN)
   03400 DNA repair and recombination proteins [BR:hme03400]
    HFX_0176 (dnaN)
DNA replication proteins [BR:hme03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    HFX_0176 (dnaN)
DNA repair and recombination proteins [BR:hme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     HFX_0176 (dnaN)
   MMR (mismatch excision repair)
    Other MMR factors
     HFX_0176 (dnaN)
  TLS (translesion DNA synthesis) factors
   Other TLS factors
    HFX_0176 (dnaN)
SSDB
Motif
Pfam: PCNA_N PCNA_C
Other DBs
NCBI-ProteinID: AFK17917
UniProt: I3R107
Position
complement(167154..167897)
AA seq 247 aa
MFKAIVSAATLRDALDSVSVLVDECKIRLNEERLSIRAVDPANVGMVDLSLDAAAFESYE
ADGGVIGVNLSRLEEVAGMAGSGDLIHLTLDEETRKLNIRIDGLSYTLALIDPDSIRQEP
DIPDLDLPANIVLEGTHLDRGIKAADMVSDHIRLRVDSTEETFHVEAEGDTDDVDLSLPP
ADLISIEAGSADSLFSLDYLKDMNKAIPADAEVTVELGEEFPVKLHYQIAEGMGNITYML
APRIQSD
NT seq 744 nt   +upstreamnt  +downstreamnt
atgttcaaggccatcgtgagtgccgcgacgctccgggacgcgctcgactctgtgagcgtc
ctcgtcgatgagtgtaagattcgactcaacgaggagaggctctctatccgtgccgttgac
cccgcgaacgtcggtatggtggacctctcgctcgacgctgcggcgttcgaatcctacgag
gctgacggcggcgtcatcggtgtcaacctctctcgcctcgaagaggtcgctggcatggcg
ggttcgggtgacctcatccacctcacgctcgacgaggagacgcgcaaactcaacatccgc
atcgacggactctcgtacacgctcgcgctcatcgaccccgattcgattcgacaggagccg
gacattccggacctcgaccttcctgcgaacatcgtcctcgagggcacgcacctcgaccgc
ggtatcaaggcggccgacatggtttcggaccacatccgtcttcgcgtcgacagcaccgaa
gagacgttccacgtcgaagccgaaggcgacaccgacgatgtcgacctctcgcttcccccg
gcggacctcatcagcatcgaagctggtagcgccgactcgctgttctcgctcgattacctc
aaggacatgaacaaggcgattccggccgacgccgaagtcaccgtcgaactcggcgaagag
ttcccggtcaaactccactaccagattgccgaagggatgggcaacatcacgtacatgctc
gccccgcgcatccagagcgactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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