KEGG   Hydra vulgaris (swiftwater hydra): 100190918
Entry
100190918         CDS       T01080                                 
Symbol
rfc1
Name
(RefSeq) replication factor C large subunit
  KO
K10754  replication factor C subunit 1
Organism
hmg  Hydra vulgaris (swiftwater hydra)
Pathway
hmg03030  DNA replication
hmg03410  Base excision repair
hmg03420  Nucleotide excision repair
hmg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hmg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100190918 (rfc1)
   03410 Base excision repair
    100190918 (rfc1)
   03420 Nucleotide excision repair
    100190918 (rfc1)
   03430 Mismatch repair
    100190918 (rfc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hmg03032]
    100190918 (rfc1)
   03400 DNA repair and recombination proteins [BR:hmg03400]
    100190918 (rfc1)
DNA replication proteins [BR:hmg03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    100190918 (rfc1)
DNA repair and recombination proteins [BR:hmg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     100190918 (rfc1)
SSDB
Motif
Pfam: RFC1 AAA BRCT AAA_30 AAA_7 AAA_22 RuvB_N AAA_14 RNA_helicase AAA_17 BRCT_2 AAA_5 AAA_16 nSTAND3 AAA_18 AAA_33 NTPase_1 PTCB-BRCT
Other DBs
NCBI-GeneID: 100190918
NCBI-ProteinID: NP_001267861
UniProt: B6DQM4
Position
12:complement(39328507..39377832)
AA seq 1116 aa
MADIRSFFSSNKNKIQKKSSSNSVIDLANDSKNNSTAKEEKPNSNGMKKLGKKRKVLVIE
SDSDEEPLPSKFRKGKSLKESDTKKYTPEKPQINKEIKLKEVSVQFPPKENVQSSNTKKP
KIQELLEKKELRPITAEDFFSGTLSVTSNKSLDDKKEKKNTPDVILPTPVKEPIKSQNKK
NKLLTNIKEKDLDTNEREDTKQDVPEIKMKEAVSKYFTEAIKSDASNNKQKLNLDVSLKE
KNKHKLKPDVISQSQYVMSSPKKTVKQKIEPDVTSPPNKIVEQKIEPYVASPSNKTVKQK
IDSDVTSPPNKKVKAEKTETKPIETNTPVEKKKSYWAYKHRDGPSALGSKELPKGSDNCL
AGLSFVITGVLEAFDRDEIADSIKRYGGKVTTSVSGKTSYIIVGRDPGETKIEKALKHKT
KQIDEDGFIDLICSHSKKPNELNNNDHNENLKSREKSFSDSSKRTPILDVNSPTLKKKGV
LETGKLDVLTSNSTSMVQNVQSPKDKPNLSQISPAISNTPQTQSPLYNSQDCTNGKTSSL
LWVDKYKPATMRNIVGQQGDKSNANKLYKWLLKWNENNSSGEKKKNFYSGKEDGSIFKAA
LLSGPPGVGKTTTANLVCQELGFSFIEMNASDTRGKKALETIIKDALSNKTVAGVMQGNT
GDKHALIMDEVDGMAGTEDRGGMQELIQLIKKTKIPIICMCNDRNHPKVRSLSNYCFDLR
FYKPRVEQIKGFAMSVAAREGFKIQPQAMEQIVVGANQDIRQVLHNLQMWNSTKSVLNYD
EAKSNANDASKNIKLGPFDIVKQLYTANDCSKMSYNEITDLFFMDYSFIPLFMQENYLYT
NPAKARGNPRVTLDLISETADSFSDSDLVDVLIRGEQSWSLLPLQGLFSTVIPCVKMAGY
IGQRIEFPRWLGKNSSMNKNHRILQELKMHMSLSAHCLKSEVNTDYIPVLKKRLTDPLLD
SSLDSSAAAKLVISTLNDYNLLREDWDSILEISKWGEEPDIASKIPSKVKSAFTRLYNKE
THKIPYTLHQAPKKIKGASQENVLEDDDEDIENEDIENEEEDSEDIKKDAMILIKKEPVS
KVSGKEKRAAVTSTDSKKKPSSKKSASSSKKGKLKK
NT seq 3351 nt   +upstreamnt  +downstreamnt
atggctgatattcgatcattcttctcatcgaacaaaaacaaaatacagaaaaagtcaagt
agcaattcagttattgatttggcaaatgattcaaaaaacaattcaacagcgaaggaagaa
aaacctaacagcaatggtatgaaaaagctaggtaaaaagagaaaggttttagtaatagaa
tcagattctgatgaagagccattaccatccaagttcaggaaaggaaaatctttaaaagaa
tcagacacaaaaaagtatacaccagaaaaaccgcaaataaataaagaaattaagcttaaa
gaagtttcagttcaatttccaccaaaagaaaatgttcaaagttctaatacaaagaagcct
aaaatacaagaattgcttgagaagaaagagttgcgtccaataactgcggaagatttcttt
tctggaactctttctgtgacaagtaataaaagccttgatgataaaaaggaaaaaaagaat
acacctgatgttatccttccaacaccagtaaaagagccaatcaaatctcaaaacaaaaaa
aacaagcttttgactaatataaaagaaaaagatttggatacaaatgaaagagaagacacc
aagcaagatgttcctgagattaaaatgaaagaagctgtcagtaaatactttactgaagcc
attaagtcagatgcgtcaaataataaacaaaaactaaatcttgatgtatctttgaaagaa
aaaaataaacataaattaaaacctgatgttatatctcagagtcaatatgttatgtcttct
ccaaaaaaaactgttaaacaaaagattgagcctgatgttacatctcctccaaataaaatt
gttgaacagaaaatagagccttatgttgcgtctccctcaaacaaaactgttaagcaaaag
attgattctgatgttacatctcctccaaataaaaaagtaaaagcagaaaaaacagaaact
aaacctatagaaaccaatacaccagttgaaaagaaaaaaagttactgggcatacaaacat
agagatggtccttcagctcttggctccaaagaactgcctaagggaagcgataactgctta
gcaggattatcctttgtaattactggtgttcttgaagcatttgatcgagatgagattgca
gattcaataaagcgttatggtggaaaagttactacgagtgttagtggaaaaactagttat
attattgttggcagagatcctggggaaactaaaattgagaaggctctcaagcataaaacc
aaacagattgatgaggatggttttatagacctaatttgttctcattcaaaaaagcctaac
gaactaaacaataatgaccataatgagaatcttaaatcaagagagaaatcattttctgat
agttcgaaaagaacacctattttagatgtaaatagtcctacattaaaaaagaaaggagtt
ttggaaactggcaaacttgatgttttaacttctaattcaacttctatggttcaaaatgtt
caatcacctaaagacaaacctaatctatcgcaaattagtccagctatttcaaacacccct
caaacacaatcccctctttataactctcaagattgcaccaatggtaaaacttcttcttta
ctctgggttgacaaatataaacctgcaaccatgcggaatattgttggtcaacaaggtgac
aaaagcaatgccaacaaactctataaatggttgctcaaatggaatgaaaacaattcatct
ggtgaaaaaaagaaaaatttttattctggaaaagaggatggttccatctttaaagctgct
ttattatctggacctccaggtgttgggaagactacaactgctaaccttgtttgccaagaa
cttggtttttcattcattgaaatgaatgctagtgatactagagggaaaaaagctctggaa
acaattataaaagatgcactttctaacaaaactgtagcaggagttatgcaaggtaatact
ggagataaacatgctttaatcatggatgaagttgatggtatggctggaacagaagacagg
ggaggaatgcaggaacttattcaactcataaaaaaaacaaaaatcccaatcatatgcatg
tgcaatgatcgtaatcatccaaaagttcgaagtctttcaaattactgcttcgatctgcgt
ttttataagccacgtgttgaacaaatcaaaggttttgcaatgagtgtagcagcacgtgaa
ggttttaaaattcaacctcaagctatggagcaaattgttgttggtgcaaaccaagatata
agacaagttttgcataatttgcaaatgtggaacagtacaaaaagtgtcttaaattatgat
gaagcaaaatctaatgcgaatgatgcaagcaaaaatataaaattgggaccatttgatatt
gtgaaacagttgtatacagctaatgactgctcaaagatgtcttataatgaaattactgat
ctattcttcatggattattcttttatacccttgtttatgcaggaaaactatttgtatacc
aaccctgctaaagcaagagggaatcctcgtgttacacttgatttaataagtgaaacggct
gattcattttcggatagtgatttggtagatgttttaatccgaggagaacaaagttggtct
ttacttcctcttcaagggttattttcaacagttattccttgtgtcaaaatggctggttat
atcggacaacgaattgaatttcctagatggttgggaaaaaattcttctatgaacaagaac
catcgtattttgcaagaactgaaaatgcacatgtctttaagcgctcattgtttgaaatct
gaggtaaacaccgactatattcctgttctaaagaagcgactaaccgatccattacttgat
tctagcttggactcctctgctgctgctaaactagttatttcaacactgaatgattataat
cttttaagagaggattgggattcaattctagaaatcagtaaatggggagaagaacctgat
attgcctcaaaaatccctagcaaagtcaaatcagcatttactcggctatataataaagaa
acacacaagattccttacactcttcaccaagctcctaaaaaaattaaaggtgcgagccaa
gaaaatgttctcgaggatgatgatgaagatatagaaaatgaagatatagaaaatgaagaa
gaggatagcgaggatattaaaaaagacgcaatgattttgattaaaaaagaaccagtctca
aaagtttccggaaaagaaaaacgagctgctgttactagcacagatagtaaaaaaaaacca
tcttcgaagaaatctgcatcatcttcaaaaaaaggaaaattaaaaaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (90)   
   KEGG ORTHOLOGY (1)   
   RefGene (86)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (18)   
   Pfam (18)   
All databases (123)   

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