KEGG   Hydra vulgaris (swiftwater hydra): 100200529
Entry
100200529         CDS       T01080                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB3
  KO
K03011  DNA-directed RNA polymerase II subunit RPB3
Organism
hmg  Hydra vulgaris (swiftwater hydra)
Pathway
hmg03020  RNA polymerase
hmg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hmg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100200529
  09124 Replication and repair
   03420 Nucleotide excision repair
    100200529
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hmg03021]
    100200529
   03400 DNA repair and recombination proteins [BR:hmg03400]
    100200529
Transcription machinery [BR:hmg03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     100200529
DNA repair and recombination proteins [BR:hmg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      100200529
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L
Other DBs
NCBI-GeneID: 100200529
NCBI-ProteinID: XP_002158521
UniProt: T2MGQ0
Position
6:complement(47270838..47271803)
AA seq 273 aa
MPYASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLH
DEFIAHRIGLIPLTSDEKVDKMCYSRDCTCSEFCDECSVKFTLDVKCTGETTRHVTSRDL
ISEDPKVIPVTSRIKDDDTGYGETDEIVIVKLRKGQELKLHAFAKKGFGKEHAKWNPTAG
VSFEYDPDNALRHTTFARPDQWPKSEYSQLDEDQYEAPYDIHAKADKFYFNVESCGSLKP
ENIVMTGISVLKKKLSELQTHHSHEIAADVLAI
NT seq 822 nt   +upstreamnt  +downstreamnt
atgccatatgcaagtcagccaagagtaaaaattttggaatggacagatgataatttgaaa
tttatattggaaaatacagatttatctgtagcaaatagtcttcgtaggatatttattgca
gaagttccaacaattgcaatcgattgggttcaaattgaaaacaacacatcagtacttcat
gatgaattcattgcccatagaattggtttaatcccactgactagtgatgaaaaagttgat
aagatgtgttattctcgagattgcacttgcagtgaattttgtgatgaatgctctgttaaa
tttacacttgatgttaagtgtactggtgaaactacacggcatgtaacaagtcgggatcta
atatctgaggatcctaaagtgataccagtaacatctcgtataaaggatgatgatacaggg
tatggtgagactgatgagattgttattgttaaacttcgaaaaggtcaagagttaaaacta
catgcattcgctaagaaaggttttggaaaagaacatgctaaatggaatccaacagcaggt
gtttcatttgaatatgatcctgataatgcattgcgtcatactacatttgcaagacctgac
caatggcctaaaagtgaatattcacagcttgatgaagaccaatatgaagctccttatgat
atacatgctaaagcagataaattttattttaatgttgaaagttgtggttcacttaaacct
gaaaacattgtcatgacaggaattagcgttttaaagaaaaagcttagtgaattgcaaacc
catcatagtcatgaaattgctgctgatgttttggctatttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (52)   
   KEGG ORTHOLOGY (1)   
   RefGene (48)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (67)   

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