KEGG   Hydra vulgaris (swiftwater hydra): 100205936
Entry
100205936         CDS       T01080                                 
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
hmg  Hydra vulgaris (swiftwater hydra)
Pathway
hmg03008  Ribosome biogenesis in eukaryotes
hmg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hmg00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    100205936
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100205936
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hmg03021]
    100205936
   03019 Messenger RNA biogenesis [BR:hmg03019]
    100205936
   03009 Ribosome biogenesis [BR:hmg03009]
    100205936
   03016 Transfer RNA biogenesis [BR:hmg03016]
    100205936
Transcription machinery [BR:hmg03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     100205936
Messenger RNA biogenesis [BR:hmg03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     100205936
Ribosome biogenesis [BR:hmg03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    100205936
Transfer RNA biogenesis [BR:hmg03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    100205936
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC_4 zf-CCHC
Other DBs
NCBI-GeneID: 100205936
NCBI-ProteinID: XP_047138375
Position
8:26392633..26445157
AA seq 1009 aa
MGVPAFFRWLSKKYPLIVVHCVEEKAKECNDVKVPVDTSLPNPNDYEFDNLYLDMNGIIH
PCSHPENKPAPKNETEMMLNIFEYIDRIFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
AAKDARESKEIIHNIKQKLIEKGAVLPPEPEKKESFDSNCITPGTEFMDRLAVCLRYYIA
HRLTNDPGWKNIKVILSDANTPGEGEHKIMDFIRKQRAQPDHDPNTKHCLNGADADLIML
GLATHEVHFTILREEFKPNQKRPCEICGQIGHEKTDCEGLPKENLGSNCVETPIVQDVEF
IFIRLHVLREYLERELKMEGLPFYNFERALDDWVFMCFFVGNDFLPHLPSLEIREGAIDR
LVNIYKRCLPQLGGYLGDSGIVNLKRAQRILQEVGDVEDEIFRKRQQFEENMKARKKQND
ERNKRQKMEGCDSPFWSPRMNGTPLGANHSPFMRTPSAFNEVSPNMKAASDLRQQLTPST
NNSSNSIQATPTSTSRKRHLEDNVEKNESDDEPVDNIRLWEEGWKERYYLHKFSVSKEKD
PVYFQKFRKHTANEYVIGLCWVLRYYYQGCCSWNWFYPFHYAPFASDFGDIEDLDVKFEK
GTVPFKPLEQLMSVFPAASGKFLPPTWRSLMSSPDSPIIDFYPTDFKIDLNGKKFAWQGV
ALLPFVDEKRLHRTLVSVYNDLTEDEIRRSRRDDEVLFVGKANPLFDYLIGLHESGMLKE
KQNIVTDLSLGVRGTVYYDENGVLPGKRYVCPLPDGEHIDCTQTFSVKYNDPVYEEDFIY
LARVLDKATPPDRILKPGDFEQNRQWSPMPGMGRGSRNPNHIGSGGHRMIRHELASNSIS
PRYRTSSPYAQTPLSYQSHQDGGRNNSFSGYNNSPRSYHTSPVNINSSRNYNNNTRSCDN
SPRSYNSPRDNQTYNRGDYHSPRLVYNSSRDHNSSFGSYGTPQRTFSSPQIEGCNQQPWS
SVRPSFCLPSPHSDRDDLERQRYSADRGKNQSQNDNRRRSYSDVQKPRW
NT seq 3030 nt   +upstreamnt  +downstreamnt
atgggagttccagcatttttccgttggttatcaaaaaaatatccattgatagttgtgcat
tgtgtcgaagaaaaggcgaaagagtgcaatgatgtaaaagttccagttgacacaagtcta
cctaatcctaatgattatgagtttgataacctttacttagacatgaatggtataattcat
ccttgctcccatcctgaaaataaaccagcaccaaaaaatgaaacagaaatgatgttgaat
atttttgaatatattgacagaatattttcaattgtacgcccaagacggctgttgtacatg
gctatagatggagtggctccaagagctaagatgaatcaacaaagatctcgtagatttcga
gcagcaaaagatgcaagggagtctaaagaaatcatccataacataaagcagaagttaatt
gaaaaaggggcagttcttcctcctgaaccagaaaagaaagaatcttttgacagtaattgt
ataactcctggcactgaatttatggataggttagctgtatgcttacgttattatattgct
catcgcttgacaaatgatcctgggtggaaaaatataaaggtgattttgtctgatgcaaat
acccctggagaaggtgaacataaaataatggattttatacgcaaacaaagagcacaacct
gaccacgatccaaacactaagcactgtcttaatggagccgatgctgatttgattatgtta
ggattggccactcatgaagtccattttactattttaagagaagaatttaaacctaatcaa
aaaagaccatgtgaaatttgtgggcaaattggtcatgaaaagacagattgtgaaggttta
ccaaaagaaaatttagggtcaaactgtgttgaaactccgattgttcaagatgttgaattt
attttcattcgtcttcatgtcctgagagaatacttagaacgtgaattaaagatggaaggg
cttcctttttacaattttgagagagcattagatgattgggtgtttatgtgtttttttgtt
ggtaatgattttttacctcatcttccttcattagagatcagagaaggagcaattgatcgt
cttgttaacatttacaaaagatgtttgccacaattgggtggttatcttggtgacagtggg
attgtaaatttaaaaagagcacaacgtattttacaagaagttggtgatgttgaagatgaa
atctttagaaaaagacagcagtttgaggaaaatatgaaagcacgaaaaaagcaaaacgat
gaacgcaacaagcgacaaaaaatggaaggctgtgattcccccttttggtcaccaaggatg
aatggaacaccccttggtgcaaatcattcaccttttatgagaactcctagcgcatttaat
gaagtttcaccaaatatgaaagcagcatctgatttaagacaacagctaacaccttcaaca
aataatagttcgaactccatacaagctacaccaacaagcacaagtagaaaaagacattta
gaagataatgtagaaaaaaatgagtctgatgatgaaccagttgataatatcagactttgg
gaagagggctggaaagagcgatattatttgcacaaatttagtgtttcgaaagaaaaagat
ccagtatattttcagaagtttcgcaagcatactgctaatgagtatgtaattggtttgtgt
tgggtgctacgctattattatcagggttgttgttcatggaattggttttatccttttcac
tatgctccttttgcatctgattttggtgatattgaagacttagatgtaaagttcgagaaa
ggcacagtaccttttaaaccgttggaacagcttatgagtgttttccctgctgcaagtgga
aaatttttacctccaacatggagatctctaatgtcaagtccggattctcctattattgat
ttttatcctacagattttaaaattgatttaaatggaaaaaagtttgcatggcaaggtgtg
gcacttcttccgtttgtcgatgaaaaaagacttcatagaacacttgttagtgtgtacaat
gacttgacagaggatgagattcgaaggtcacgtcgtgatgatgaagtgttgtttgtagga
aaagccaatcctctttttgactaccttataggtttacatgaaagtggaatgttaaaagag
aaacagaacattgtcacagatttatccttgggtgtcagaggaacagtgtactatgatgaa
aatggagttcttccaggaaagcgatacgtgtgtccgctacctgacggtgaacatattgat
tgtacacaaacgtttagtgtaaagtacaacgatcctgtttatgaagaagatttcatttat
cttgccagagttctcgataaagcaacgccaccagaccgtatattaaaaccaggagatttt
gagcaaaatagacagtggtcgcctatgccaggcatgggtcgtggttcacgtaatcccaac
catataggaagcggtggtcatagaatgatacgacatgaactggcttctaatagtatctcg
cctcgctatcgaacatcgtcgccttatgcacaaacccctttatcttatcaaagtcatcaa
gacgggggtcgcaacaatagttttagtggctacaataattcaccaagaagttatcatacc
tctccggtaaatatcaatagttctagaaactacaacaataatactagaagttgtgataat
tcaccaagaagttataattcaccaagagacaatcaaacatataaccgaggtgattatcac
tctcctcgccttgtttataattcgtcacgtgatcataattcatcgtttggaagttatggc
acacctcaaagaacattcagctcgccacaaatcgaaggatgtaatcagcaaccatggagc
agtgttaggccttctttttgtttaccatccccgcatagcgacagagacgatcttgaacgc
caacgttatagtgctgatcgtggaaaaaatcaaagtcaaaatgataaccgtcgacgatct
tattcagatgttcaaaaaccgaggtggtag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (112)   
   KEGG ORTHOLOGY (1)   
   RefGene (108)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (130)   

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