KEGG   Hydra vulgaris (swiftwater hydra): 100213291
Entry
100213291         CDS       T01080                                 
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
hmg  Hydra vulgaris (swiftwater hydra)
Pathway
hmg03022  Basal transcription factors
hmg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hmg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100213291
  09124 Replication and repair
   03420 Nucleotide excision repair
    100213291
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hmg03021]
    100213291
   03400 DNA repair and recombination proteins [BR:hmg03400]
    100213291
Transcription machinery [BR:hmg03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     100213291
DNA repair and recombination proteins [BR:hmg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     100213291
SSDB
Motif
Pfam: PH_TFIIH BSD DUF4473
Other DBs
NCBI-GeneID: 100213291
NCBI-ProteinID: XP_012553893
UniProt: T2MGP2
Position
6:complement(41804870..41834270)
AA seq 522 aa
MSEKTVACIANTVRYKKIDGTLSLLSNKITWSATNGVGKNFQCLYSEIKMQRISPESSSK
VQLQIVLHTESSYNFQFVNPKGRAAQLKNRNEIKDLLAELIPAHREKANKDLEEKNKLLK
ENSDLYQLYKDLVVTGIITAEEFWENQKSVNTMACSSASSEKQKVGIASGLLAELKPDMH
GCNELRFNLTADSIDAIFKMYPAVKKKYVASVPDEMSEKEFWTEFFQSQHFHRDRIPKNN
QSNKDTFGELAKKDEQESFKKFVTDFYDPLIDFSSTCPITEEGYGTSEVKRHSSHDTLIK
HFNHQSFMILQEGNNRVLTEKNADTDRKRKRIREAVELDELENHSQEFVSTLKIVDTDKF
FHGQEAVYENGNKPCSKMFIQSILTWKPDLGNVLSAKPALSAMTNVSPGGKYMLISAQNS
TFVDNISLQLYQETRKHYLSLAELLRHFWSCFPIKTAQLEEKVQRMASSLEKFRQTKLLN
FSTTLSPQNTQLIDHMNDMISTALKKFITWEEKRTSTKISRT
NT seq 1569 nt   +upstreamnt  +downstreamnt
atgtctgagaagacagttgcatgtattgcaaatacagtaaggtacaaaaaaattgatggt
acacttagtcttttgtcaaacaaaattacatggagtgcaacaaatggtgttggtaaaaac
ttccaatgcttgtattcagagataaaaatgcaaagaataagtcctgaatcaagttcaaaa
gtacagcttcaaattgtacttcatacagaatcttcatacaattttcaatttgtgaatcca
aaaggcagagcagcacaattaaagaatcgaaatgaaataaaagatcttttagcagagcta
attcctgctcatcgagaaaaagcaaataaagatcttgaagagaaaaataagttgctcaaa
gaaaatagtgacttgtaccagttgtataaagacttagttgtaacagggattataactgct
gaagaattttgggaaaatcagaaatcagtcaacacaatggcatgttcttctgcttcctct
gaaaaacaaaaggttggcatagcatcaggtttactggcagaactaaaacctgatatgcat
ggttgcaatgagttaaggttcaatttgactgcagacagcattgatgccatattcaaaatg
tatccagcagttaaaaagaagtatgttgcctctgtacctgacgaaatgagtgaaaaagag
ttttggacagaattttttcaatctcagcactttcatcgagaccgaatacccaaaaataac
caatcaaataaagacacttttggagaattagcaaagaaagatgaacaagaatcttttaag
aagtttgttacagacttttatgaccctttaattgatttctcttctacatgtccaattaca
gaggaggggtatgggactagcgaagttaaaagacattcatcacacgatactctaattaag
catttcaatcatcaaagttttatgatacttcaagaaggtaacaatagggtgttaacagaa
aaaaatgctgacactgatagaaaaagaaaacgaattcgtgaagctgttgaactggatgag
ttagagaatcactcccaagagtttgtttcaacattaaaaattgtagatacagataaattt
tttcacggtcaagaagcagtttatgagaatggaaacaaaccttgctctaagatgtttata
caaagtatattgacatggaaacctgatcttggaaatgtactttctgcaaaacctgctcta
tctgctatgactaatgtttctccgggtggaaagtatatgctgatatctgctcaaaacagt
acttttgttgataatatctccttgcaattataccaagagacgcgtaaacattatctttcc
ttagctgagttgttaaggcatttctggtcttgttttcccataaaaacggcacagttagag
gaaaaggttcaacgaatggcttctagtttggagaaattcagacagacaaaattattaaac
ttttcaactacactgtcaccgcaaaatacacaactaattgatcatatgaatgacatgata
tcaactgctttgaaaaagttcattacttgggaagaaaaacgcacttcgacaaaaattagc
agaacgtag

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