KEGG   Hydrocarboniclastica marina: soil367_08255
Entry
soil367_08255     CDS       T06192                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
hmi  Hydrocarboniclastica marina
Pathway
hmi03030  DNA replication
hmi03410  Base excision repair
hmi03420  Nucleotide excision repair
hmi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hmi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    soil367_08255
   03410 Base excision repair
    soil367_08255
   03420 Nucleotide excision repair
    soil367_08255
   03430 Mismatch repair
    soil367_08255
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hmi03032]
    soil367_08255
   03400 DNA repair and recombination proteins [BR:hmi03400]
    soil367_08255
Enzymes [BR:hmi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     soil367_08255
DNA replication proteins [BR:hmi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     soil367_08255
DNA repair and recombination proteins [BR:hmi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     soil367_08255
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     soil367_08255
   MMR (mismatch excision repair)
    DNA ligase
     soil367_08255
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      soil367_08255
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD HHH PTCB-BRCT RNA_ligase zf-NADH-PPase
Other DBs
NCBI-ProteinID: QCF25911
UniProt: A0A4P7XG13
Position
1831632..1833677
AA seq 681 aa
MAAPNNAPRAVQERVTQLRTELDDHNYRYYVLDDPSIADVDYDRLLRELSDLEQAHPELV
TQDSPTQRVGATPDSPFAPVSHEVPMLSLANAFDAGELEDFDRRVRERVGAAGDIEYACE
PKLDGLAVSVLYEDGRLVRAATRGDGYVGEDITANVKTIGSVPLRLRGDAFPRKLEVRGE
VYMPKAGFERLNRALAENGEKKFVNPRNAAAGSLRNKDPRVAAQRPLELCCYSVAVNNSA
ELPDTHSELLEQLRRYGFRISAELAVVSGFQACLEFYRQLEAKRERLAYEIDGIVFKVND
LGLQEELGFVSRAPRWAIAYKFPAQEAGTRVRSVEFQVGRTGAITPVARLEPVFVGGVTV
SNATLHNMDEIERLGLRIGDHVIIRRAGDVIPQVVKVVLEKRPEGTEPVEFPTACPACGS
EIEQAEGEVVARCSGGLVCPAQRKEEIRHFVSRKALDIEGLGERWIEILVEQGIVGSVAD
IFTLDKETLVGLERMGEKSAENLLASIKASSRPELHRFLYALGIREVGEATAKALAQHFG
SLGAIQAADQEALQAVADVGPVVAAHVETFFRQPHNQDVIDALMRYGIEVQDPPENTGGE
PLKGRTYVLTGTLDSLTRDEAKGYLESLGAKVSGSVSGKTYAVVAGADAGSKLTKAEKLA
VPVLGEADLLELLREHGIETH
NT seq 2046 nt   +upstreamnt  +downstreamnt
atggcagccccgaacaatgccccgagagcggttcaggaacgggtgacgcaactgcgcacg
gaactggacgatcacaactaccgctattacgtcctcgacgatccctccattgcagatgtt
gattatgaccggctgctgcgggagctgagcgaccttgagcaggcgcacccggaattggta
acgcaggattccccgacccagcgggtcggcgccacaccggactcaccgtttgcgcctgtc
agccacgaagtgccaatgttgtccctggcgaacgcattcgatgccggtgagctggaggat
tttgatcgccgcgtccgtgaacgcgttggcgcggcgggcgacatagaatacgcatgcgag
cctaaactggatgggctggcggtgagcgtcctgtatgaagacggccggcttgtacgggca
gcaacccgtggtgatgggtatgtgggcgaggacatcaccgccaacgtcaagacgattggc
tcagttccgcttcgactaaggggtgacgcgtttccgcgcaaactggaagtccgcggtgag
gtctatatgcccaaggccggttttgagagacttaaccgggcgctggccgaaaacggagaa
aaaaaattcgtcaacccacgcaacgctgctgccggcagcctgcgcaataaagatccacgg
gttgcggcgcaacgaccgctggaactctgttgctacagcgtcgcggtgaataacagcgcc
gagctgcccgatacacactcggaactcctggagcagctgcggcgttatggcttccgtatc
agtgcagagttggcggtggtcagcggtttccaggcctgtctcgagttctaccgccagttg
gaagcaaaacgggagcgtttggcttatgagatcgatggcatcgttttcaaggtcaatgac
ctcggcctccaggaggagttgggttttgtttcccgcgcaccgcgctgggcgatcgcctat
aagtttcccgcgcaggaggcgggtacgcgggttcggtctgtcgagtttcaggtggggcgc
acgggcgctatcacgcctgtcgctcgactggagcctgtgtttgtcggcggtgtaacagtc
agtaatgcgacgctgcataacatggacgagatcgagcgactggggcttcggatcggagac
catgtcattatccgccgtgccggcgatgtcattccccaggtcgtcaaggtcgtactggag
aagcgaccggaagggacagaacctgttgagttcccgacggcctgtcccgcctgtggatct
gaaatagagcaggcagaaggtgaggtggttgcgcggtgctcaggcgggttggtctgtccc
gcccagcggaaggaggagatacgccattttgtctcaagaaaggctctggacatcgaaggt
ctcggcgagcgctggattgagattctggtcgaacagggaattgtcggcagcgtggctgat
atattcacactcgataaagagaccctggttgggcttgaacgcatgggggaaaagtcggct
gaaaatctgctggcgtctataaaggcgtccagtcgccccgagctgcatcgttttctctat
gcgctgggcattcgcgaagtgggcgaggccaccgccaaggctctggcgcagcacttcggt
tcgcttggcgcgatccaggcggctgaccaggaggcgttacaggcagtggccgatgtaggg
ccggtagtggcggcccatgtcgaaacttttttccggcaaccccacaaccaggacgtcatc
gatgccttgatgcgctacgggatagaggtccaggatccgccagaaaatacaggtggcgaa
ccgttgaaaggtcgtacctatgtactcacaggcactctggacagtctgacccgggacgaa
gccaaaggctacctggagtctcttggggccaaggtgtccggcagcgtgtccggcaagacc
tacgccgttgttgccggcgcggatgccgggtccaaactgaccaaagcggagaagctcgcg
gtgcctgtgctgggcgaagccgatctgcttgagctcctcagggagcacggcattgaaacg
cactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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