KEGG   Hydrocarboniclastica marina: soil367_11865
Entry
soil367_11865     CDS       T06192                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
hmi  Hydrocarboniclastica marina
Pathway
hmi02020  Two-component system
hmi02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:hmi00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    soil367_11865
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    soil367_11865
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hmi03021]
    soil367_11865
Transcription machinery [BR:hmi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     soil367_11865
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_21
Other DBs
NCBI-ProteinID: QCF27913
UniProt: A0A4P7XM02
Position
2640416..2641957
AA seq 513 aa
MKASLQLKMGAQLTMTPQLQQAIKLLQLSTLDLQQEIQQALESNPMLEVAEEGDVDEPEV
RAEHESAEGEEPTPREQEKTREEAAPAEDYADEDSDSWNNEEWAGTNDLPDDLPVDTAWD
DVYQTAPASGVSRGEDDDDSDFESRNSPVETLIDHILWQLNLTPLSERDRVIAHALVDSI
DNNGYLTTSLEDVHGGLYNPDDEDPVELDEVEAVLHRLQHFDPPGIGARDLQECLLIQLN
QLPGDTPYLPQARLLVSHYLNLLGSRDYAQLMRRSRLSEEQLREVLALIQSLQPRPGETV
NRVPPEYVVPDVIVTKHAGRWRIELNPDIAPRIRVNSMYASFIKRADSSADNTYMRDQLQ
EAKWFIKSLQSRNETLLKVATRIVEHQQGFLEHGEEAMKPLILSEIAQAVEMHESTISRV
TTQKYMHTPRGIFELKYFFSSHVSTDEGGECSSTAIRAMIRKLVASESARKPLSDNKMAA
LLADQGIKVARRTVAKYREAMNIAPSNERKRLV
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgaaggcttctctacaactgaagatgggcgctcaattaacaatgacgccccagctccag
caggctatcaagctgcttcagctgtctacgctggacctccagcaggagattcagcaagcg
ctggaatccaatcccatgctcgaagttgccgaagaaggcgatgtcgacgagcctgaggtt
cgtgccgagcatgaatcggccgaaggcgaggaacctacgccccgggaacaggagaaaaca
cgcgaagaagctgctccggctgaagattacgccgatgaagactcggacagctggaataac
gaagaatgggccggtaccaatgacttaccggatgaccttcccgtcgataccgcctgggat
gacgtgtaccaaaccgctcccgcgtctggcgtctcgcggggggaagacgatgatgacagc
gatttcgagtctcggaactcaccggttgagacactgattgaccacattctctggcagctg
aatctgacgccgctcagcgaacgtgaccgcgtgattgcccacgccctcgttgattcgatc
gacaataacggctacctcaccacctcgctggaggacgtgcacggcgggctttacaacccc
gacgacgaggatccggtcgaattggacgaagtggaagccgttctgcaccggctgcaacac
tttgaccctcccggtataggcgcccgcgatttgcaggaatgcctgctgatccagctgaat
cagcttccaggggataccccatacctgccccaggcccgacttctggtcagccactacctg
aatctgctcggtagccgtgattacgcacagctgatgcgtcgctcgcgactgtcagaagaa
cagttgcgggaggtcctggcgctgattcagagcctccagccgcgcccgggagagaccgta
aaccgtgtgccaccggaatacgttgtgcccgacgttatcgtcaccaagcatgctggccgg
tggcgaatcgaactcaacccggacattgccccgcgtatacgggtcaactccatgtatgcg
tcgttcatcaagcgggcagatagcagcgccgataacacctacatgcgtgatcagctacag
gaagcgaaatggttcatcaaaagtctgcaaagtcgtaacgagacgctgctcaaggtggcg
acgcgtattgtcgagcatcagcaggggttcctcgaacacggcgaagaggccatgaagcca
ttgatcctgtcagaaattgcacaggccgtggagatgcacgaatcaacgatatcccgtgtc
accacgcaaaagtacatgcatacgccacgcggtatttttgagctcaagtactttttctcc
agccacgttagcaccgacgaaggcggagagtgttcctcgaccgccatccgggcaatgatc
cggaaactggtcgcgtcggagtctgcgcgcaaaccgctgagtgataacaaaatggccgca
ctgctggctgaccagggcattaaagttgcccggcggacggtcgccaagtaccgcgaagcc
atgaatattgcgccttcgaacgagcgcaaaagactggtctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (12)   

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