KEGG   Hyphomonas neptunium: HNE_0372
Entry
HNE_0372          CDS       T00397                                 
Symbol
dnaX
Name
(GenBank) DNA polymerase III, subunits gamma and tau
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
hne  Hyphomonas neptunium
Pathway
hne03030  DNA replication
hne03430  Mismatch repair
hne03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hne00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HNE_0372 (dnaX)
   03430 Mismatch repair
    HNE_0372 (dnaX)
   03440 Homologous recombination
    HNE_0372 (dnaX)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hne03032]
    HNE_0372 (dnaX)
   03400 DNA repair and recombination proteins [BR:hne03400]
    HNE_0372 (dnaX)
Enzymes [BR:hne01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HNE_0372 (dnaX)
DNA replication proteins [BR:hne03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     HNE_0372 (dnaX)
DNA repair and recombination proteins [BR:hne03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     HNE_0372 (dnaX)
SSDB
Motif
Pfam: DNA_pol3_gamma3 DNA_pol3_delta2 DUF3646 AAA AAA_22 AAA_16 RuvB_N AAA_5 AAA_30 AAA_14 AAA_18 AAA_assoc_2 DNA_pol3_delta DUF815 AAA_19 SRP54 TsaE AAA_24 nSTAND3
Other DBs
NCBI-ProteinID: ABI76697
UniProt: Q0C591
Position
complement(361448..363184)
AA seq 578 aa
MSADDSSTGDDATGALFGGGDAPAPGKTYEVLARKYRPRRFEDLIGQEAMVRTLSNAFET
GRIAHGFMLTGVRGVGKTTTARLLARGLNYEPKADAKGKKGKAAGPSIHLDPPGEHCDAI
MASRHPDVLELDAASRTGVADMRDLLDSARYGPVSARYKVYIIDEVHMLSNASFNALLKT
LEEPPPHLKFIFATTEIRKVPVTVLSRCQRFDLKRLDSGELSRHLGNVAQSEGANVSEEA
LALIARAAEGSVRDGLSLLDQGIVQTTDGEEVSGAAVRAMLGLGDRARLLDAVEKAVGGD
AKGALAEVREQVAGGADPAVILKDILDIAADISVAQATGDDWTQAGPADWANRTRALAQR
LTPAQAARNWQLLLSGYGDLQVAPDPATALNMVILRLAAASTLPSPEEAARMIAEGSRPP
GKDNPPLKAPPQAPGGIESFADMIAIMVAAREVGLQVDTERFVRPSHFEPGKLACALAPG
APQGLLGRLKIFLETYSDLDWSVEEADTDTESVRERERREKAERIESAKQDPRVAAALAL
IPGAIILDVEDPPELLEMEGGEGDVTSNVIPLKTRRPA
NT seq 1737 nt   +upstreamnt  +downstreamnt
atgagcgctgacgattcctccacaggcgatgacgccactggcgcccttttcgggggcggg
gacgcgcctgcgcccggcaagacctatgaggtgctggcccggaaataccgcccgcgccgc
tttgaggacctgatcggccaggaagcgatggtgcgcacgctgtccaacgccttcgaaacc
ggccggatcgcccatggcttcatgctgacgggcgtgcgcggggtgggcaagacgaccacg
gcgcgcctgctggcccgcggcctgaactatgagcccaaggcggatgcgaagggcaagaag
ggcaaggcggctggcccctccatccatctcgacccgccgggcgagcattgcgacgcgatc
atggcgagtcggcatcctgatgtgctggagctcgacgccgcctcccgcaccggcgtcgcc
gatatgcgcgacttgctggattcggcgcgctacgggccggtgtccgctcgctacaaggtc
tatatcatcgacgaagttcacatgctgtcgaatgcgagcttcaacgcgctgctcaagacg
ctggaagaacccccgccgcatctgaagttcatctttgcgacgaccgagatccgcaaggtg
ccggtgacggttctctcgcgctgccagcggtttgatctcaaacgcctcgatagcggcgag
ctttcccgccaccttggcaatgtggcgcagagcgagggggcgaatgtttccgaggaagcc
ctcgccctgattgcgcgggcagccgaaggctctgtgcgcgacgggctgtcgctgctcgat
cagggcattgttcagactacggacggcgaggaagtcagcggcgcggcagtgcgcgcgatg
ctgggactgggcgaccgggcgcggctgctggacgcggtggagaaagccgttggcggcgac
gccaaaggggcgctcgccgaagtgcgcgagcaggtggcgggcggggctgatccggcagtg
atcctgaaggacatccttgatattgcagccgatatttccgtggcgcaggcaaccggcgac
gactggacgcaggccggcccggccgactgggcaaaccgcaccagagcgctggcccagcgc
ctgacgcccgcgcaggccgcgcgcaactggcagctgttgctctctggctacggcgacctt
caggtggcgcccgacccggcaaccgcgctgaacatggtgatcctgcggctggcggcggcc
tctacccttccgtcgccggaagaagcggcccggatgatagccgaggggtcccgtccgccg
ggaaaggataatccgccccttaaggcaccgccgcaggcgcccggcggcatagagagcttt
gccgacatgatcgccatcatggtggccgcgcgcgaggtggggctgcaggtggataccgag
cggtttgtgcggccttcgcattttgaacccggaaagcttgcctgcgcgctggcgccgggg
gcgccgcaggggctgttggggcggctgaaaatcttcctggaaacctatagcgatctcgac
tggagcgtggaggaagccgacaccgataccgagtcggtgcgcgagcgggagcggcgagaa
aaggccgagcggatcgagagcgccaaacaggacccacgggtggcagccgcgctggccctg
atacccggcgccatcatcctggatgtagaagatccgcctgaactgcttgaaatggagggc
ggcgagggcgatgtgaccagcaacgttatacccttgaaaacccgccggccggcctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (19)   
   Pfam (19)   
All databases (56)   

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