KEGG   Hoeflea sp. IMCC20628: IMCC20628_02324
Entry
IMCC20628_02324   CDS       T03926                                 
Name
(GenBank) DNA-directed DNA polymerase III PolC
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
hoe  Hoeflea sp. IMCC20628
Pathway
hoe03030  DNA replication
hoe03430  Mismatch repair
hoe03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hoe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    IMCC20628_02324
   03430 Mismatch repair
    IMCC20628_02324
   03440 Homologous recombination
    IMCC20628_02324
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hoe03032]
    IMCC20628_02324
   03400 DNA repair and recombination proteins [BR:hoe03400]
    IMCC20628_02324
Enzymes [BR:hoe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     IMCC20628_02324
DNA replication proteins [BR:hoe03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     IMCC20628_02324
DNA repair and recombination proteins [BR:hoe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     IMCC20628_02324
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon
Other DBs
NCBI-ProteinID: AKI01023
UniProt: A0A0F7PJP5
Position
complement(2416591..2420154)
AA seq 1187 aa
MARESKSAKVLANLAAGTQQARERDTNIEGRSSEAWPGFVHLRVHSAYSLLEGALPIKTL
IKRAVADDQPALAISDTNNLFGALEFSVKTIEAGIQPLIGCQLDIDMEDGQDTERRSHRD
HLQKAPHIVLFAATAAGYDRLVALVSQAYLDGDNSDRPHISLSWLEQGAEGLIALTGAAG
GPVDQVLREGYPDRARDRLERLKSVFGDRLYVELQRQRGFDRAHEAKMIALAYECEVPLV
ATNEAFFPTPDDFEAHDALMAVAHNAVMSDDRRPRLSVDNCLKSRSEMTSLFADIPEALA
NSVEIARRCSAIVESRAPILPRFTGGGEDDPEAALAAEASELRRQSLEGLERRLARTGMA
DGFVETDYRERLQVELDIIESMKFPGYFLIVADFIKWAKDQGIPVGPGRGSGAGSLVAYA
LTITDVDPLRFSLLFERFLNPARVSMPDFDIDFCQDRREEVIRYVQKKYGREQVGQIITF
GSLQARAALRDVGRVLEMPYGLVDRICKLVPNNPAAPTPLHKAIEEEPRFAEEVEKEPAV
GRLLDIAQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDPRSDMPVTQFNMKWVEQAGL
VKFDFLGLKTLTVLKTAVGFIAKRNITIDLETLPLDDTPTYEMLSRGETVGVFQVESAGM
RKALIGMRPDRIEDIIALVALYRPGPMENIPVYNARKHGEEELASIHPKIDGLLAETQGV
IVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIQAEMDKQRARFVDGAVERGVSKPQANL
IFDLLAKFANYGFNKSHAAAYGIVSYQTAYLKAHYPVEFLAASMTLDMSNTDKLNDFRQD
AKRLGIEVVPPSVQTSFRHFETGDNRIYYALAAIKGVGDAAVEHIVTVRGDEAFASLEDF
CTRIDPRQVNRRVLESLIAAGGFDCFGQERAALSGGLDRILGFAQRAQENRISGQSDMFG
IGGGGATEAETIQLPAVMPWLPADKLHREYQALGFYLSAHPLDSYNELLAKMRVQTWADF
SLAVKAGATAGRLAGTVTSKQERKTRTGNKMGIIAFSDSSGQYEAVLFSEGLALYRDLLE
PGKSIVITVTAEERPEGVGLRIQTADSLEDRAARGQSALRVYMRDSKPLNSVSTHLKTRG
EGQVSFVMIKDDGRREIEVTLSDRYRITPQIASALKAAPGVLDVELV
NT seq 3564 nt   +upstreamnt  +downstreamnt
atggcgcgggaaagcaagtcggccaaggtgctggccaatctggctgcgggtacgcagcag
gcgcgtgagcgtgacaccaatatcgaaggccgcagctcggaagcgtggccgggctttgtg
catttgcgcgttcattctgcctattcgctgcttgagggcgcgctgccgatcaagaccctg
atcaagcgggcagtggctgacgatcagcctgcgctggccatcagcgacaccaacaatctg
ttcggggcattagagttttcggtcaagaccatcgaagcgggcattcagccgctcatcgga
tgccaactcgatattgacatggaggatggccaggacacggagcgccgttctcatcgtgat
catctgcaaaaggcgccgcacatagtcttgtttgcagcgacggcggctggctatgaccgg
ctggtggcgcttgtcagccaggcctatctcgatggagacaacagcgatcgtccgcatatt
tcgctgtcatggcttgaacagggcgccgaagggctgattgccctgaccggtgctgccggt
gggccggtggatcaggttttgcgcgagggatatccggaccgggccagagaccgtcttgaa
cgactcaaatccgtgttcggcgaccggctctatgtcgaattgcagcgccagcgcggattt
gaccgggcacacgaagccaagatgattgcgctcgcctatgagtgcgaagtgccgctggtt
gcgaccaacgaggcgttctttcccacccccgatgatttcgaggcccatgacgcgctgatg
gcggttgcccacaatgcggtcatgtccgatgatcggcggccgcgtctgagcgtcgacaat
tgcctgaaatcccgcagcgaaatgacaagcctgtttgccgacattccggaagcgttggca
aactcagtggaaatcgcccgtcgctgcagcgcgattgtcgagagccgcgctccgatcctg
ccccggttcaccggtggtggtgaggatgacccggaggcagctctggccgccgaagcctcc
gaattgcggcggcaatcgctcgaggggctggagcgccggcttgcccggaccggcatggcc
gacggatttgtcgaaacggactatcgcgagcggttgcaggtcgaactcgacatcatcgag
tcaatgaaatttcccggttacttcctaatcgtggctgacttcatcaagtgggctaaggat
cagggcataccggtaggtcctggccgtggttccggcgctggttcgctggtcgcctacgcg
ttgaccatcaccgacgtcgatccgttgcgcttctctctgctgtttgagcgctttctcaac
cccgcccgggtatcgatgcccgactttgacatcgatttctgccaggatcgccgtgaagag
gtgatccgctatgtgcagaagaaatacggccgcgagcaggtcgggcagatcataacattc
ggaagcctgcaggcgcgcgccgccttgcgcgacgtcggccgggtgctcgaaatgccctat
ggtctggtcgaccgcatctgcaaactggtgcccaacaatccagccgctccaacgccactg
cacaaggcgatcgaggaagagccgcgcttcgctgaggaagtcgaaaaggaaccggcggtt
ggccgcttgctcgacatcgcgcaaaagcttgagggtctgtaccgccacgcctcgacacac
gccgcgggtatcgtcattggcgaccggcccttgtcgcagcttgtgccgatgtaccgcgat
ccgcgctctgacatgccggtcacccagttcaacatgaaatgggtggagcaggcaggcctg
gtcaaattcgactttcttggcctcaagaccctgacggttctcaagactgcggtcggtttt
atcgccaagcgcaatattaccattgatctcgaaaccttgccgcttgatgacactccgacc
tacgagatgctgtcgcgcggcgaaaccgtcggcgtattccaggtggaatcggccggcatg
cgcaaggcgctgatcggcatgcgtcccgaccggatcgaggacatcatcgcgttggtggcg
ctctaccgtccgggcccgatggaaaacatcccggtctacaatgcgcgcaagcatggcgag
gaggaactggcgtcgatccatcccaagatcgatggtcttcttgccgaaacccagggcgtc
atcgtctaccaggaacaggtgatgcagatcgcccaggttctggccggctattcgctcggc
gaagccgaccttttgcgccgcgccatgggcaagaagatccaggcggaaatggacaagcag
cgcgcccgctttgtcgatggcgccgtcgaacgcggcgtgtccaagccgcaggccaatctg
atttttgaccttctcgccaagttcgccaattacggtttcaacaagtctcatgccgcggcc
tacggtatcgtttcctatcagacggcctatctcaaggcgcattatccggtcgagtttctc
gccgcctcgatgacgctcgatatgtccaacaccgacaagctgaatgacttccgtcaggac
gccaagcggttgggcatcgaagttgtgccgccatcggtgcagaccagcttccgccatttc
gaaaccggcgacaaccggatctactatgcgctggctgccatcaagggcgttggcgatgcg
gccgtcgagcatattgtgacggtccgcggcgatgaagcttttgcttcactcgaggatttc
tgcacgcgcattgatccccgccaggtcaaccggcgggtgcttgaaagcctgatcgccgcc
ggcggcttcgattgttttggccaggagcgtgctgccttgagtggcggccttgaccggatt
ctgggctttgcccagcgcgcccaggaaaaccgcatcagcgggcagagcgacatgttcggt
atcggcggcggtggtgcgacagaggccgaaaccatacagttgcccgctgtcatgccctgg
ttgccagccgacaagctgcaccgcgaataccaggcgctgggcttttacctgtccgcccat
ccgcttgattcctataatgaattgctggccaagatgcgagtccagacctgggcggatttc
tcgctcgcggtcaaggccggcgccactgccggcaggcttgcaggcaccgttaccagcaag
caggaacgcaagacccgcaccggcaacaagatgggcatcatcgccttttccgacagctcc
ggtcagtatgaggcagtgctgttttccgaaggcctggcgctctaccgggacctgctcgaa
cccggcaagtcgatcgtcatcaccgttaccgccgaggaacggccggaaggtgtcgggctc
cggatccagactgccgattcgctggaagaccgggcggcgcgcggccagtccgcactgcgg
gtctatatgcgtgattcaaagccgctcaattctgtatcgacgcatctgaaaacccgtggc
gaggggcaggtgtcatttgtcatgatcaaggatgatggccgccgcgaaatcgaggtgacg
ctgtcggaccgctacaggatcacgccacagattgcctcggcgctgaaggcggcgcccggc
gtgctggatgtcgaactggtttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (35)   

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