KEGG   Haliangium ochraceum: Hoch_3975
Entry
Hoch_3975         CDS       T01103                                 
Name
(GenBank) lysyl-tRNA synthetase
  KO
K04567  lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Organism
hoh  Haliangium ochraceum
Pathway
hoh00970  Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:hoh00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    Hoch_3975
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01007 Amino acid related enzymes [BR:hoh01007]
    Hoch_3975
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:hoh03016]
    Hoch_3975
Enzymes [BR:hoh01000]
 6. Ligases
  6.1  Forming carbon-oxygen bonds
   6.1.1  Ligases forming aminoacyl-tRNA and related compounds
    6.1.1.6  lysine---tRNA ligase
     Hoch_3975
Amino acid related enzymes [BR:hoh01007]
 Aminoacyl-tRNA synthetase
  Class II (A)
   Hoch_3975
Transfer RNA biogenesis [BR:hoh03016]
 Eukaryotic type
  Aminoacyl-tRNA synthetases (AARSs)
   Multi-aminoacyl-tRNA synthetase complex (MSC)
    Hoch_3975
 Prokaryotic type
   Other AARSs
    Hoch_3975
SSDB
Motif
Pfam: tRNA-synt_2 tRNA_anti-codon
Other DBs
NCBI-ProteinID: ACY16474
UniProt: D0LI95
Position
complement(5478977..5480662)
AA seq 561 aa
MSSQERPEQTLHRIIGERRDKAAELRDLGQNPYRNDFRPTHQCAEVRAKYEGTQPSEPPS
KGIQPVDGETIRLAGRLVARRGFGKTVFAPIRDSSGDLQLFLNVDHLDQDAFEKLLPRLD
VGDQVGAEGVIFWTKRGELSLLCTHFHILSKSLRPLPDKWKGLTNVETRYRQRYLDLAVN
PEVREVFRKRSQILRGLRRFFDARAFLEVETPMMHPVIGGAAARPFVTHHNALDLTLYLR
IAPELYLKRLLVGGFDRVYEINRSFRNEGLSRAHNPEFTMLEFYQAYADYRDLMDLTEEL
FTELAQEVNGTLETTWDGKAIDLARPWQRLSVRRAVTEVAGRSPEVFDDPVRAAEEALAV
DAPAGDVLSALLESLSADELSALGGREALGKIWEDPAQRPALATKISERYADEHTRRVRA
GHVAFAIFEAAVEESLVQPTFLTDFPLAVSPLARRNEDDPAFCDRFELFIGGSEMANAFS
ELNDPDDQRTRFQAQLEARAQGQDETMDYDEDYCRALEVGMPPAAGEGIGIDRLTMLLTG
QSSIRDVILFPQMRPESSQVE
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgtcctcccaggaacgccccgagcagactctgcaccgcatcatcggcgagcgccgcgac
aaggcggcggagctgcgcgacctcggtcagaatccgtatcgcaacgactttcgcccgacg
caccagtgcgccgaggtgcgtgccaagtacgagggtacccagcccagcgagccgcccagc
aagggcatccagccggtcgatggcgagaccattcgcctggccggccggctggtcgcgcgc
cgcggcttcggcaagaccgtgttcgcgcccatccgcgacagcagcggcgacctgcagctc
ttcctcaatgtcgaccacctggaccaagacgccttcgagaagctgctgccgcggctcgac
gtcggcgaccaggtcggcgccgagggcgtgatcttctggaccaaacgcggcgagctgtcg
ctgctgtgcacgcacttccacatcctgagcaagtcgctgcggccgctgcccgacaagtgg
aagggcctcaccaacgtcgagacccgctatcgccagcgctatctcgacctggcggtcaac
cccgaggtccgcgaggtgttccgcaagcgctcgcagatcctgcgcggtctgcgccgcttc
ttcgacgcgcgcgccttcctcgaggtcgagacgccgatgatgcacccggtgatcggcggc
gccgcggcgcggcccttcgtcacccatcacaacgcgctcgacctcaccctgtatctgcgc
atcgcgcccgagctgtacctcaagcgcctgctggtcggcggcttcgaccgggtgtacgag
atcaaccgcagcttccgcaacgagggcctgtcgcgcgcgcacaaccccgagttcacgatg
ctcgagttctatcaggcctacgccgactaccgcgacctgatggacctcaccgaggagctg
ttcaccgagctggcgcaggaggtcaacggcacgctcgagaccacctgggacggcaaggcg
atcgatctcgcgcgcccctggcagcgcctgagcgtgcgccgggcggtgaccgaggtggcc
gggcgcagccccgaggtgttcgacgatccggtgcgcgccgccgaagaggcgctggcggtc
gatgctccggccggcgatgtgctgagcgcgctgctcgagtcgctctcggccgacgagctc
agcgcgctgggcggccgcgaggcgctgggcaagatctgggaggatccggcgcagcggccg
gcgctggctaccaagatcagcgagcgctacgccgatgagcacacccgccgggtgcgcgcc
ggacacgtggcctttgccatcttcgaggccgcggtcgaggagagcctggtgcagccgacc
ttcctcaccgatttcccgctggcggtgtcgccgttggcgcgccgcaacgaggacgacccc
gcgttctgcgaccgcttcgagctgttcatcggcggctccgagatggccaacgcgttcagc
gagctcaacgatcccgacgaccagcgcacgcgcttccaggcgcagctcgaggcccgcgcc
cagggccaggacgagaccatggactacgacgaggattactgccgcgcgctcgaggtcggc
atgccgccggcggcgggcgagggcatcggcatcgatcgcctgaccatgctgctcaccggc
cagagctcgatccgcgacgtcatcctgttcccgcagatgcgcccggagtcctcgcaggtc
gaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (24)   

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