KEGG   Halothermothrix orenii: Hore_07800
Entry
Hore_07800        CDS       T00838                                 
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
hor  Halothermothrix orenii
Pathway
hor03030  DNA replication
hor03430  Mismatch repair
hor03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hor00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Hore_07800
   03430 Mismatch repair
    Hore_07800
   03440 Homologous recombination
    Hore_07800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hor03032]
    Hore_07800
   03400 DNA repair and recombination proteins [BR:hor03400]
    Hore_07800
Enzymes [BR:hor01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Hore_07800
DNA replication proteins [BR:hor03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Hore_07800
DNA repair and recombination proteins [BR:hor03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Hore_07800
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger HHH_6 tRNA_anti-codon tRNA_anti_2 DEDDh_C HHH_3 RNase_H_2 ABC_sub_bind Zn-ribbon_8 YhfH TF_Zn_Ribbon
Other DBs
NCBI-ProteinID: ACL69537
UniProt: B8CW68
Position
835713..839906
AA seq 1397 aa
MLVAIKPSNKFGSIFRYIILNRKSKKIKCILKEDVNIELDKEKYFDEKFSEFQVEFVKPL
PLKKEIKFIWPQIVEEVNKKFTYLNGWLSRAELQVNERNIITIKVEGKVAWKSLNDTRVK
KYLINRISYYLDREIKIEIKNGDFLKSLPESKPDLNRIKKKKVNKTDKKKRGKHKSGSDT
NIILGNRIRTEEITPIEEVKHEGQGVVIKGEVFNLEERVTRRGKYLYIFAVTDRSSSITC
KFFIDDKSDLKSTLNNEDWVMVKGRVQFDTYSNEIVIMCNSIEKTEAEVRVDTADDKRIE
LHLHTKMSALDSVVDVEKVIERAAEWGHSAIAITDHGVVQAYPDAYQAGKKHNIKILYGL
EAYMVDDGEPIILNPPDVSLESATFVVFDLETTGLNKFKNEIIEIGAVKVKSGKVIDEFS
SFVKPGESIPNKITELTGITNEMVSRAPDIEGVIGDFLEFIDGSILVAHNADFDYGFLQV
ALKKTGQGDISYPVLDTLTLSRALLPDLSNHKLNTLARHLNVRLDNHHRAVEDARATSEI
FINFLSNIKNEGIETVPGINRLSTKINWRELPTYHTVIFAKNKQGLKDIYRLVSESHLNY
FYRKPRILKSHLIQCRKNLIIGSACEAGQLYRSIINNKPYREIIKIASFYDYLEIQPTGN
NKFLVGNKVESIDELEKINYQIYKLGKKLNKPVVATCDVHFLDPEDDIYRKVLQAGQGYD
EAEEQAPLYFRTTNEMLEEFSYLGKKAAREVVIENPAKISDQIEELKPLPDGLFAPEIEG
ANDQIRKMTYQRAHELYGDPLPSIIEERLEKELKAIIDNGYAVIYLISHKLVKKSLEDGY
LVGSRGSVGSSLVATMCEITEVNPLPPHYRCPRCKQVEFVNDENTGVGADLPDKNCPHCG
TRYVKDGFDIPFEVFMGFEGDKVPDIDLNFSGEYQGEIHKYTEELFGSNYVFRAGTISTI
AKRTAFGFVKGYLDDNGLRLNKAEIDRLVKGCTGVKRTTGQHPGGLMVVPKAYDIHDFSP
IQRPANDQETDVITTHFDYHSISGRILKLDLLGHDDPTTIRMLQDLTGVNPHDIPLDDPD
TMDIFSSTDPLGVSPEEIGTVVGTLGIPEFGTSFVRQMLVDTRPTTFAELVRISGLSHGT
DVWLNNAQDLIKSGKARLSEVISVRDDIMNYLIQKGLEPGKSFWIMEHVRKGKGLTEEEE
QYMREHNVPDWYIESCKKIKYMFPKAHAAAYVMMAFRIAYFKVHYPEAFYTTYFTIKADD
FDAHMINQGYDHIIEVKKNLEARGNDMTAKEKGILTVLEIVIEAMARGIEFLPVDLYKSD
ATKFKLTDKGLLPPLVSLQGLGSSAAEKIAVTRQEAPFSSVEDLVNRTRISKTVVEILEE
HGSLDGLPERDQLSLFN
NT seq 4194 nt   +upstreamnt  +downstreamnt
atgttagtagcaataaaaccatcaaataagttcggtagtatttttagatatataatactt
aacaggaaatctaaaaaaataaaatgtatattaaaagaagatgttaatatagaactggat
aaagaaaaatattttgatgaaaaatttagtgaatttcaggttgagtttgttaaaccatta
cccctgaaaaaagaaataaagtttatctggccccagattgttgaagaagtaaataaaaaa
tttacttaccttaacggatggctttccagggctgaattacaggttaatgagagaaatata
attaccattaaagttgaaggtaaggttgcctggaagagcctcaatgacaccagggtcaaa
aagtatttaataaaccggatatcttattatcttgatagggaaattaaaattgaaataaaa
aatggcgattttttaaaaagcctgccggagagtaaacccgatttgaatagaataaaaaag
aaaaaagttaataagaccgacaagaaaaaaagagggaagcataagtccggtagtgatact
aatattatacttggaaacaggattagaacagaagaaattaccccgattgaagaagtaaaa
catgaaggacagggagtagtaattaaaggagaggttttcaacctggaagaacgggtaacc
aggcggggaaagtatttatatatttttgctgttactgatagaagtagttcaattacctgt
aagttttttatagatgataaatctgaccttaaatctacattaaataatgaagactgggtt
atggtcaaaggtcgtgttcagtttgatacctatagtaatgaaattgtgataatgtgtaat
tcaatagaaaaaacagaagccgaggttagagtagatactgctgatgataagaggattgaa
ttacatttacatacaaagatgagtgcactggattcagtagttgatgtagaaaaagtaata
gaaagggctgcagaatggggacattctgctattgcaataactgaccatggtgtggttcag
gcctatcctgatgcttatcaggctggcaaaaagcataatataaagatcctgtatgggctg
gaggcatatatggtagacgacggtgagcccatcattttaaatccacctgatgtttctctt
gaatcggctacttttgttgtatttgacctggagacaaccgggttaaacaaatttaaaaat
gaaatcattgaaatcggtgccgttaaagtgaaatcgggtaaggttatagatgaattttca
agctttgttaagcccggtgaaagtatacctaacaaaattactgagctgaccggtattacc
aatgaaatggtgtccagggcccctgatattgagggggttattggagatttccttgaattc
atagatgggtctattcttgtggcccacaatgctgattttgactatggttttctccaggtg
gcccttaaaaaaacaggtcagggggatatatcatatcccgttctggatacccttaccctc
agcagggctttgttacctgatttatctaaccataaattgaataccctggccagacattta
aatgtaaggcttgataatcatcaccgggctgttgaagatgcccgggctacttccgagata
tttattaattttttaagtaatataaaaaatgagggtatagaaactgttcccggaattaat
cgtctgtcgactaaaataaactggagggaattaccgacttatcatactgttatatttgcc
aaaaacaaacaggggttaaaggatatttatcggctggtatcggagtctcacctcaattat
ttttatagaaagccaagaatccttaaaagtcatttaattcagtgcaggaaaaacctaata
atcgggtctgcctgtgaagcaggtcaactttacaggagtataattaataataaaccctat
cgggaaatcataaagatagcaagtttctatgattacctggagatacagcctactggtaat
aataaatttctggtcggtaataaagtggaatccattgatgagttagaaaagatcaactat
cagatttataaactggggaagaaattaaataaaccggtagtagcaacctgtgatgttcat
tttctagatcctgaagatgatatttatagaaaggttctccaggccggtcaggggtatgat
gaagctgaggaacaggcccccctttattttagaacaaccaatgagatgcttgaggaattt
tcgtatcttggtaaaaaagccgcccgggaggttgttattgaaaatccagcaaaaatttct
gatcagattgaagaattgaaacccctgcctgatggattatttgcccctgaaattgaagga
gccaacgaccagatacgaaagatgacttatcagagagcccatgaactttatggagatccc
ctgccttcaattatagaggaaagacttgaaaaggaattaaaggcaattatagataatggt
tatgctgttatttatctaatttctcataaactagtaaaaaaatcactggaagacggttat
ctggttggttccagggggtcagttggttcatcactggtggctacaatgtgtgagattacc
gaggttaaccccctgcccccacattatcgatgcccacggtgtaaacaggtggagtttgtt
aatgatgaaaatacaggggttggggctgacctccccgataaaaattgtcctcactgtggg
accaggtatgttaaagatggttttgatattccctttgaagtatttatggggtttgaagga
gataaagtacctgatattgatttaaacttctctggagagtatcagggtgagatccataaa
tatactgaagagctttttggatctaactatgtttttagagctggaaccatctctactata
gccaaaagaacagcttttggatttgtaaagggttatcttgatgataatggtttaaggtta
aataaagccgagattgacaggcttgttaaagggtgtaccggagtaaagcggacaacaggt
cagcatcccggaggtttgatggttgttcccaaagcctatgatattcatgattttagtcct
atccagcgcccggccaatgaccaggagactgatgtaattacaacccactttgattatcat
tcaataagcgggagaatattaaaactggatttactcggccacgatgatccgacaaccata
agaatgctacaggatttgaccggagtaaaccctcatgatatacccttagatgatcctgat
actatggatatcttttccagtactgatcctctgggtgtcagtcctgaagagataggtact
gttgtgggtacacttggaataccggagtttggcacaagttttgtaaggcaaatgcttgtt
gatacacgaccaactacctttgctgaactggtgaggattagtggtttatcccatggaaca
gatgtctggcttaataatgcccaggatttaattaaaagtgggaaggccagactttcagag
gttatctcagtccgggacgatataatgaactatctaattcaaaaagggctggaaccaggt
aaatccttctggataatggaacatgtcagaaaaggaaaagggttaacagaagaagaagaa
caatatatgcgggaacataatgtgcctgactggtatattgaatcatgtaaaaagattaaa
tatatgttccccaaggctcatgcagcagcctatgtaatgatggctttcagaattgcatat
tttaaggttcattatccggaggcattttatactacctactttacaattaaagcagatgat
tttgatgcccatatgataaatcagggatatgatcatataattgaggtaaaaaagaacctg
gaagccaggggtaatgatatgacagcgaaggagaagggaattttgactgttctcgaaata
gttattgaagccatggcccgggggatagaatttttgcctgttgatctctataaatcagat
gctactaaatttaaattaacagacaagggattattaccccctctggttagtctccagggt
ctgggaagtagtgctgctgaaaagattgctgtaaccagacaagaagcgcctttttcttct
gtagaagatctggttaacaggaccagaatcagtaaaacagtagttgaaatactggaagaa
catggctccctggatggactaccggagcgggatcagttatcactgtttaattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (89)   
   KEGG ORTHOLOGY (1)   
   RefGene (86)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (113)   

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