KEGG T03301: JL26

Glaesserella parasuis SH03: JL26_03480

Entry

JL26_03480        CDS       T03301

Name

(GenBank) polynucleotide phosphorylase/polyadenylase

K00962

polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]

Organism

hpas Glaesserella parasuis SH03

Pathway

hpas03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:hpas00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JL26_03480
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hpas03019]
    JL26_03480
   03016 Transfer RNA biogenesis [BR:hpas03016]
    JL26_03480
Enzymes [BR:hpas01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     JL26_03480
Messenger RNA biogenesis [BR:hpas03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     JL26_03480
Transfer RNA biogenesis [BR:hpas03016]
Prokaryotic type
  tRNA degradation factors
   JL26_03480

SSDB

Motif

Pfam:

RNase_PH RNase_PH_C PNPase S1 KH_1 KH_2 S1_2 SLS1_KH2 aRib

Other DBs

NCBI-ProteinID:

AIK16934

Position

634362..636491

AA seq 709 aa
MTPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKEVNEGQDFFPLTV
DYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLFPEGFFNEIQVIATVVSVN
PQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDNQFVLNPTTSEQRLSRLDLVVAG
TDKAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENIKEFVKEAGKPRWDWVAPEPNTD
LINKVKALAEARLGDAYRITEKQARYEQIDAIKADAIAQLTAEDETISSGKIVDIITALE
SQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSALFTRGETQALAVATLGTERD
AQIIDELTGEKSDRFLFHYNFPPYSVGETGRIGSPKRREIGHGRLAKRGVLAVMPTAEEF
PYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDI
LGDEDHLGDMDFKVAGTREGVTALQMDIKIEGITPEIMRIALNQAKGARMYILGVMEQAI
PAPRSEISDFAPRIHTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAATD
NNAAKRVMERIEEIVAEVEVNAIYKGKVTRVVDFGAFVSILGGKEGLVHISQITEARVER
VADYLSVGQEVQVKVVEIDRQGRIRLTMKDLNGDATATEIVEEIQELAE

NT seq 2130 nt +upstreamnt +downstreamnt
atgactccaatcgttaaacaatttaaatacggtcagcataccgtaactttagaaacaggg
gctattgctcgtcaagcaacagcagcagtaatggcaagtatggacgatacgacggttttt
gttaccgttgtggcaaaaaaagaggtgaatgaaggccaagacttcttcccattaactgta
gattatcaagagcgtacttacgcggcaggtcgtattccgggtggtttcttcaaacgtgaa
ggtcgtccatctgaaggcgaaaccttaatcgcgcgtttaattgaccgtccagttcgtcca
cttttccctgaaggtttcttcaacgaaattcaagtgattgcaacagtggtttctgttaat
ccacaaatcagcccagatttagtggcgatgatcggtgcttcagcagcattatctctatct
ggcgtgcctttcaacggtccaatcggtgcggctcgtgttggtttcattgataaccaattt
gtgcttaacccaactacatcagaacaacgtttaagccgtttagatttagtagtggctggt
acagacaaagcggtattaatggttgaatctgaagcagatattttaactgaagaacagatg
ttagcggcagtggtattcggtcacgagcaacaacaagttgtgattgaaaacatcaaagaa
tttgtgaaagaagcaggcaaaccacgttgggactgggttgctccagagccaaatacggat
ttaatcaataaagttaaagcattagcagaagctcgtctgggcgatgcttaccgtattact
gaaaaacaagcacgttatgaacaaattgacgcaatcaaagctgatgctatcgctcaatta
accgcagaagatgaaaccatttcaagcggcaagattgtagatattattaccgcattagaa
agccaaatcgtgcgtagccgtattatcgcaggcgaaccgcgtattgacggtcgtacagtg
gataccgtgcgtgcattagatatttgcactggcgttttaccacgtactcacggttcagca
ttgtttacccgtggtgaaacacaggcgttagcagttgcgacattagggacagagcgtgat
gcacaaattattgacgaattaacaggcgaaaaatcagatcgcttcttattccactacaac
ttccctccatattcagtaggtgaaacaggtcgtatcggttcgccgaaacgtcgtgaaatc
ggtcacggtcgtttagcgaaacgtggcgtgttagcagtaatgccaacggcagaagagttc
ccatatgttgtgcgtgtggtttctgaaattaccgagtcaaacggttcttcatcaatggct
tctgtatgtggtgcttctcttgcgttaatggacgcaggtgtaccaatcaaagcggctgtt
gctggtatcgcaatgggcttagtgaaagaagaagagaaatttgtggtactttcagacatt
ttaggtgatgaagaccacttaggtgatatggactttaaagtagcaggtactcgtgaaggt
gtaactgcattacaaatggacatcaaaattgaagggatcacccctgaaattatgcgtatc
gcattaaatcaagcaaaaggtgcgcgtatgtacattttaggcgtaatggaacaagcgatc
cctgcaccacgttcagaaatttctgacttcgcacctcgtattcatacaatgaagatcgat
ccgaagaaaatcaaagatgtgatcggtaaaggtggtgcgacaattcgtgcattaaccgaa
gaaaccggcacatcaatcgacattgatgatgacggaacagtgaaaattgcggcaacagac
aacaacgccgcgaaacgtgttatggaacgtatcgaagagatcgttgcagaagtcgaagtg
aatgcaatctacaaaggtaaagtaactcgtgtggttgatttcggtgcattcgtgtctatc
cttggcggtaaagaaggtttagtgcatatttctcaaatcacggaagctcgtgtagaacgt
gttgcggattacttatctgttggtcaagaagttcaggtgaaagtggtagaaatcgatcgt
caaggtcgtatccgcttaactatgaaagatctgaatggtgatgcaactgcaacagaaatt
gttgaagaaattcaagaattagcagaataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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