KEGG   Helicobacter pylori PeCan4: HPPC_07135
Entry
HPPC_07135        CDS       T01322                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
hpc  Helicobacter pylori PeCan4
Pathway
hpc03030  DNA replication
hpc03430  Mismatch repair
hpc03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hpc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HPPC_07135 (dnaE)
   03430 Mismatch repair
    HPPC_07135 (dnaE)
   03440 Homologous recombination
    HPPC_07135 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hpc03032]
    HPPC_07135 (dnaE)
   03400 DNA repair and recombination proteins [BR:hpc03400]
    HPPC_07135 (dnaE)
Enzymes [BR:hpc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HPPC_07135 (dnaE)
DNA replication proteins [BR:hpc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     HPPC_07135 (dnaE)
DNA repair and recombination proteins [BR:hpc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     HPPC_07135 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon
Other DBs
NCBI-ProteinID: ADO07635
UniProt: E1Q4K7
Position
complement(1418828..1422463)
AA seq 1211 aa
MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK
EGIKPIIGMEAYIHNDDNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGFYYFPR
INKKLLREHSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKRIACEYQEIFEDD
FYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTL
NDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPPS
FKFTKAYAKEEGLDFEDDASYFAHKAREGLKERLILVPKEKHDQYQERLEKEIEVITNMK
FPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFLNPER
VSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPYKEA
DDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWEYSLNLENLNR
NAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLKTLTVI
DDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGLNKRLRPSSFE
DIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTIVYQEQVMQIV
QTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANLWDLIVKFAGY
GFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEVRALEIEVMPP
HINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKGDYKSLEDFIS
RVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANEMMQGGNSLFG
AMDGGTKEQVILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIKGFKNLVKSID
IEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLFEKQLSALEELDI
NKPLVFKCKIEEQEEVARLRLFEILDLESAREVKIPKARYKDPEKQKEEVREIPPMEILA
SSSCSLAIVLENDVKKEFLRQIKESALKHQGKRPLYLIIKDKDKQFKIQSDLMVNEKIKD
DFKGLEWRDLA
NT seq 3636 nt   +upstreamnt  +downstreamnt
atgaaagagaataaagctttcacgcatttgcacttgcacacggaatattcgcttttagac
ggggcgaacaagattaaaattctggccaaacgcatcaaagaattgggcatgaaaagcgtg
agcgtaactgatcatgggaacatgtttggagcgattgatttttatacgagcatgaagaaa
gaaggcattaagcctatcatcggcatggaagcgtatattcataacgatgacaacctctct
agcaaagaaaccaagcagcgtttccatttgtgcttattcgctaaaaaccaagagggctat
gaaaatttgatgttcttaagctctatggcgtatttagaggggttttattacttcccgcgc
atcaataaaaagcttctaagggagcattctaagggcattatcgcttctagcgcgtgcttg
caaggggaagtcaattaccatttgaatactcataatgagagaaaccgcaagtatggggct
aaaggctatgatgaagccaaaagaatcgcttgcgaataccaagagatttttgaagacgat
ttttatttagaaatcatgcgccatggcattttagatcagcgattcattgatgagcaagtc
attaaaatgtctttagaaacagggttaaaaatcattgccaccaacgacacccactacacc
atgcctaatgacgccaaggctcaagaagtggcgatgtgcgtagcgatgggtaaaacccta
aacgataaggggcgcttgaaacactccgtgcatgagttttacattaaatcccctgaagaa
atggcaaagctctttgcagatattccagaagctttagaaaacacccaagaaatcgctgat
aaatgcgttttagagattgatttaaaagacgataaaaagaaccccccaacccctccaagt
ttcaaattcactaaagcttacgccaaagaagaggggctggattttgaagatgacgcttct
tattttgcccataaggccagagagggcttgaaagaacgcttaatcttagtgccaaaagaa
aagcatgatcaataccaagaacgcttagaaaaagaaattgaagtcattacgaacatgaaa
ttcccagggtatatgctgatcgtgtgggattttatccgttacgctaaagaaatgggcatt
cctgtagggcctggtagggggagcgcggctgggagtttggtggcttttgccttaaaaatc
accgatattgaccctttgaaatacgatttgctctttgaaaggtttttaaaccctgaaaga
gtcagcatgcctgatattgatacggatttttgccagcgccggcgtaaggaaatcatagaa
tacatgattgaaaaatacggcaaatacaatgtggctcaagtcatcacctttaataagatg
ttggctaaaggcgtgattagagatgtcgcaagggtgttggacatgccttataaagaagcc
gatgattttgccaaactcatccctaatcgcttaggcatcacgctcaagggctatgaaaaa
aatggcgagttcatagagggggcgtgggaattagagcctaaaatcaaggaattagtagag
agtaatgaattagccaaacaagtgtgggagtattcgctcaatttagagaatttgaatcgc
aacgcaggcgtgcatgctgcagccttagtggtggatagccaaaaagagttgtggcacaaa
acccctttatttgcctctgaaaaaaccggcggtatcgttacgcaatattccatgaagtat
ttagagccggtggatttgatcaagtttgacttcttggggcttaaaaccttgaccgtgatt
gatgatgcgcttaaaatcattaaaacgcaacataacattgatgtggattttttatcgctg
gatatggacgatccgaaagtgtataaaacgatccaaagcggggatacggtggggatattc
cagattgaatccgggatgtttcaagggcttaacaaacgcttaaggccttcgagctttgaa
gacattatcgccattatcgcgctaggcagaccagggcccatggaatcaggcatggtagat
gattttgtaaacagaaagcatggcattgagcctatcacttatgcgtttaaagaattagag
ccgattttaaagcccacttacggcacgatcgtctatcaagagcaagtgatgcaaatcgtg
caaactatcggcggttttagtttgggtgaagcggatctcatccgccgcgctatggggaaa
aaagacgctcagattatggcggacaataaggctaagtttgtagaaggcgctaaaaattta
gggcatgatggccaaaaagcggctaatttgtgggatttgatcgttaaatttgccggctat
ggtttcaacaaatcgcattcagccgcctatgcgatgatcacttttcagacggcgtattta
aagacttattacaagcatgagttcatggcagcgatgctcactagcgaatccaataagatt
gaatccgtggcgcgctatattgatgaggttagggctttagaaattgaagtgatgccccca
cacatcaattcttctatgcaagatttcagcgtggcggagtttaaaaaccaaaagggcgaa
ttggaaaagaaaatcgtgtttggtttaggagcgattaaaggggttgggggtgagccgatt
aaaaacatcattgaagaaagggctaaaggggattataagagtttagaagattttatttca
cgggtggatttttctaaactcactaaaaaatctttagagccattagtgaaatcagggagt
ttggataatttaggctacacccgaaaaaccatgctcgctaacttggatctgatctgtgat
gctgggcgcgctaaagacaaggctaatgaaatgatgcaagggggtaactccctttttggg
gcaatggatggcgggacaaaagagcaggttattttagacatgactgatttgggcgaacat
gacgctaaaacgcttttagaatgcgaatatgagactttaggtatccatgtttcaggcaat
ccattagacgagtttaaagaagagattaagggctttaaaaatttagtcaaaagcattgat
attgaagagttagaaatcggctcacaagcttatttgttgggtaaaatcatggaagttaaa
aagaaaattggcaaacgaagcggtaagccttatggcacagcggacattttggacagatat
ggcaagtttgaactcatgctgtttgaaaagcaattgagcgctttagaagagttggatatt
aataagcctctagtgtttaaatgcaagattgaagagcaagaagaagtggcgcgattaagg
ctttttgaaatcttggatttagagagcgctagggaggttaaaatccctaaggcccgttat
aaagaccctgaaaagcaaaaagaagaggtgcgcgaaatcccccccatggaaatactcgct
tctagttcttgctctttggcgatcgtgttagaaaacgatgtgaaaaaagagtttttaaga
caaatcaaagagagcgctttaaaacaccagggcaaacgccccttgtatttgatcatcaaa
gataaggataagcaattcaaaatccaaagcgatttaatggtgaatgaaaagattaaggac
gattttaaagggttagagtggagggatttagcttga

DBGET integrated database retrieval system