KEGG   Helicobacter pylori F30: HPF30_0149
Entry
HPF30_0149        CDS       T01895                                 
Symbol
vacB
Name
(GenBank) 3'-5' exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
hpf  Helicobacter pylori F30
Pathway
hpf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hpf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HPF30_0149 (vacB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hpf03019]
    HPF30_0149 (vacB)
   03016 Transfer RNA biogenesis [BR:hpf03016]
    HPF30_0149 (vacB)
Enzymes [BR:hpf01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     HPF30_0149 (vacB)
Messenger RNA biogenesis [BR:hpf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HPF30_0149 (vacB)
Transfer RNA biogenesis [BR:hpf03016]
 Prokaryotic type
  tRNA degradation factors
   HPF30_0149 (vacB)
SSDB
Motif
Pfam: RNB
Other DBs
NCBI-ProteinID: BAJ56246
Position
137141..139075
AA seq 644 aa
MQGFLRSLFFGVKKIPKRFVSLIEKGVLKEAVRFNKERYFLKEGFDIGRIERAENKAFFI
SLVKNYPKDPLIKNLPPSFKTDALILCKIECSKKRPIAFFKAALLNTDHAMIAYLAKKNH
QIVAIPFKEPFKKPILLKHSQKSLLELPRHCVVKIDLKKREISEILGALEDPLIDENLSL
SLFDRIKDFSKDCLNLAKHYAQLKASDFKNRINYSHIPFITIDPKDAKDFDDAIFYDQEK
RVLFVAVADVSEFVPKYSSLDKEARIRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLA
LVYEIPLDDLENAQLFQGVIEVRANCTYEEINHFLSAQQSSLDKDLQQSLLGFLEMALKL
KKERLKKGFNFNSFENKLYLNKEGRIEKIETQTESNAHTLIEEAMLLANQSSANLLDKHF
QNKGIYRTHKEPSLEQQKRLYDKLFDYEIMRPKNMGFFSFLEHALKIAKEKKLEREVSRL
IIKSQNLALYSPVQESHFGLGFASYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLE
ETPELCAELNALQKKTALIERDFVKRKFARLALELLEKEFLGVVLEVKDWVVVGLKELIG
LKVLIKTNKVFKSLEKVRVKITHADLVLGQVWGEITERIKEHVS
NT seq 1935 nt   +upstreamnt  +downstreamnt
atgcaagggtttttaagaagcctgttttttggggttaaaaagatccctaaacgattcgtt
tccctaatagaaaagggcgttttaaaagaagcggttagattcaacaaggaacgctatttt
ttaaaagaaggctttgacataggcagaattgagcgggcagaaaataaggcgtttttcatt
tctttagtgaaaaattaccccaaagaccctttaatcaaaaacttacccccatcttttaaa
acagacgctttgattttatgcaaaatagaatgttctaaaaaacgccccatagcctttttt
aaagccgctcttttaaacacagatcatgcgatgatagcttatttggctaaaaaaaatcac
cagattgtggctatcccttttaaagagccttttaaaaaacccattcttttaaagcacagc
caaaaatccttattggaattgcctaggcattgcgtggtaaaaatcgatcttaaaaagcgt
gaaatcagcgaaattttaggggctttagaagaccctttaatagatgaaaacctttcttta
agcctttttgacaggattaaggatttttcaaaagattgtttgaatttagctaaacattac
gcgcagcttaaagcgagcgattttaaaaataggatcaattattctcacatcccttttatc
accattgatcccaaagatgctaaagattttgacgatgcgattttttatgatcaagaaaaa
agggttttgtttgtggcggtcgctgatgtgagcgaatttgtgccgaaatattccagtttg
gataaagaagctaggattaggggctttagcgtgtatttccctaatagcgtgtatcccatg
ctgcctttgagtttgtctcaaggggcatgctcactaaaagcgtttgaaaaacgcctggct
ttagtgtatgaaatccctttagatgatttggaaaacgcccaattgtttcaaggcgttatt
gaagttagggctaattgcacctatgaagaaatcaatcattttttaagtgcccaacaaagc
tctttggataaagatttgcaacaaagccttttggggttcttagaaatggctttaaagtta
aaaaaggagcgtttaaaaaaagggtttaatttcaattcgtttgaaaacaagctgtatcta
aataaagaagggcgtatagaaaaaattgaaacgcaaacagaaagcaacgcgcacaccctt
atagaagaagccatgctattagccaaccaatctagcgcgaatttattggataagcatttt
caaaataaggggatataccgcacccataaagagccaagtttagagcagcaaaaacgcctc
tatgacaagctttttgattatgagatcatgcgccctaaaaacatgggctttttttctttt
ttagagcacgctttaaagatagccaaagaaaagaagttagaaagagaagtttcgcgcttg
atcattaaatctcaaaatttagccctttatagccccgtgcaagaaagccattttggtttg
gggtttgccagctatacgcatttcacttcgcccattagacgatacagcgatttagcctta
cacaggcttttaaaagaattgttgttccatcaagctaaaggctgttcgtatttgttagaa
gaaacgcctgaattgtgcgctgaattgaacgctttacaaaaaaagaccgctttgattgaa
agggattttgtcaaacgcaaattcgctcgcttagctttagaacttttagaaaaagaattt
ttgggcgttgttttggaggttaaagattgggtggtggtggggctaaaagaattaataggg
cttaaagttttaatcaaaacgaacaaggtttttaagtctttagaaaaggtgcgcgttaaa
atcacgcatgcggatttggttttagggcaagtttggggcgaaatcacagaaaggattaaa
gagcatgtatcgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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