KEGG   Helicobacter pylori F30: HPF30_0238
Entry
HPF30_0238        CDS       T01895                                 
Symbol
ffh
Name
(GenBank) signal recognition particle protein
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
hpf  Helicobacter pylori F30
Pathway
hpf02024  Quorum sensing
hpf03060  Protein export
hpf03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:hpf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    HPF30_0238 (ffh)
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    HPF30_0238 (ffh)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    HPF30_0238 (ffh)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:hpf02044]
    HPF30_0238 (ffh)
Enzymes [BR:hpf01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     HPF30_0238 (ffh)
Secretion system [BR:hpf02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   HPF30_0238 (ffh)
  Eukaryotic Sec-SRP protein
   HPF30_0238 (ffh)
SSDB
Motif
Pfam: SRP54 SRP_SPB CbiA SRP54_N AAA_31 AAA_22 Zeta_toxin AAA_30 AAA_24 nSTAND3 AAA_17 cobW APS_kinase 6PF2K ArsA_ATPase AAA_16 AAA_14 AAA_19 Fer4_NifH SLFN-g3_helicase AAA AAA_11 ABC_tran AAA_33 T2SSE NTPase_1 Thymidylate_kin ParA DO-GTPase1 KTI12 NACHT ResIII AAA_5 TsaE ParBc AAA_18 ATP_bind_1 YqeC PhageMin_Tail
Other DBs
NCBI-ProteinID: BAJ56335
Position
245229..246575
AA seq 448 aa
MFQALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLN
GIGKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKT
KNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVFYEENKSVKEIANNALKRAKEAQFDVLL
VDSAGRLAIDKELMQELKEVKETLNPHEVLYVADALSGQDGVKSANTFNEEIGVSGVVIS
KFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGDIISLAEKTA
SVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMANALKDTDL
ESSLEVKKIKAMVNSMTKKEQENPEILNGSRRKRIALGSGLEVSEINRIIKRFDQASKMA
KRLTNKKGISDLMNLMSQAKNQTPPKMR
NT seq 1347 nt   +upstreamnt  +downstreamnt
atgtttcaagcattaagcgatgggtttaaaaacgcgctcaataaaatccgctttcaagat
gatgaaaaagcgctagatcgggcgttagatgaattgaaaaaaacgctcttaaaaaatgat
gtgcatcataaagtggctagggaattgctcaaaaaagtggaaagtcaaaccaaacttaat
ggcattggtaagcagcaatttttagacgctttagaaaagagtttgttagaaattttaagc
gctaaagggagcagtggttttactttcgctcaaacgccccccaccgtggttttaatggca
ggtttgcaagggagcggtaagacaaccaccaccgctaaactcgctcattatttaaaaacc
aaaaacaaaaaagtgcttttatgcgcatgcgatttgcaacgcctagcggcagtggagcaa
ttaaaggttttgggcgaacaggtgggcgtagaagttttttatgaagaaaataaaagcgtg
aaagaaatcgctaacaacgctttaaaaagggctaaagaagcgcaatttgatgttttgctc
gtggatagcgcggggcgtttagccattgataaagagcttatgcaagaattaaaagaagtt
aaagaaaccttaaacccccatgaggtgctgtatgtcgcagacgcattgagcgggcaagat
ggggtcaaaagtgcgaacacctttaatgaagaaataggcgtgagtggggtggtgataagc
aaatttgacagcgattctaaagggggtatcgccttaggcatcacttaccaattaggctta
cccttgcgtttcattgggagcggggaaaaaatccctgatttagatgtgtttgtgcctgaa
aggattgtggggcgtttgatgggggctggagatattatctcgctcgctgaaaaaaccgcc
agcgttttaaaccctaatgaagccaaagatttgagcaaaaaactcaaaaaagggcaattc
actttcaatgactttttaaaccagattgaaaaagtgaaaaaattaggctctatgagttct
ctaatctctatgattccaggtttagggaatatggcaaacgcgctaaaagacacggattta
gaaagctctttagaagtgaaaaaaatcaaggctatggtcaattccatgaccaaaaaagag
caagaaaaccccgagattttaaacggcagccgaagaaaaaggatcgctttagggagcggc
ttagaagtgtctgaaatcaatcgcatcatcaaacgctttgatcaagcgagcaaaatggcg
aaacgcttaacgaataaaaagggcattagcgatttgatgaatctaatgagtcaggctaaa
aatcaaacaccccctaaaatgcgctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (39)   
   Pfam (39)   
All databases (50)   

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