KEGG   Helicobacter pylori 35A: HMPREF4655_21303
Entry
HMPREF4655_21303  CDS       T01892                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC, B subunit
  KO
K03702  excinuclease ABC subunit B
Organism
hpo  Helicobacter pylori 35A
Pathway
hpo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hpo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HMPREF4655_21303 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hpo03400]
    HMPREF4655_21303 (uvrB)
DNA repair and recombination proteins [BR:hpo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HMPREF4655_21303 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      HMPREF4655_21303 (uvrB)
SSDB
Motif
Pfam: UvrB_inter Helicase_C UvrB ResIII UVR DEAD AAA_7 Microtub_bd AAA_30 DUF87 SWI2_SNF2 Kinesin DUF4252 DUF5923 UBA Mur_ligase_C
Other DBs
NCBI-ProteinID: ADU41383
Position
complement(1311797..1313788)
AA seq 663 aa
MRVLKMPLFDLKSPYPPAGDQPQAIEALMKSLKNNNHYQTLVGVTGSGKTYTMANIIANI
NKPTLIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSIN
DDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKHAYKSFLLKL
VEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIK
RLDSVMLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEM
ISATGVCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAG
DMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQII
RPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKA
RYMHSEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSET
SLIQTMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRAL
EEELKLRDDEVKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKL
RTL
NT seq 1992 nt   +upstreamnt  +downstreamnt
atgcgagttttaaagatgcctttatttgatttaaaaagcccttacccaccagcaggcgat
cagccccaagccatagaagccttaatgaaaagcttaaaaaataacaaccattatcaaact
ttagtgggagttacagggagcggtaagacttatacgatggctaatatcatcgctaacatc
aacaagcccactctgatcatgagccataataagaccttatgcgcgcagctctatagcgaa
tttaaggcgtttttcccgcataatagggtggagtattttatctcccactttgattactac
cagcctgaaagctatatccctagaagggatttattcattgaaaaagacagctctattaat
gatgatttagagcgtttgagattgagtgcgaccacctcacttttaggttatgatgatgtg
atcgtgatagcgagcgtttcggctaattatggtttgggtaaccctgaagaatatttaaaa
gtcatggaaaaaatcaaagtgggcgagaagcacgcttataagagctttttactcaagcta
gtagaaatgggttatagccgtaatgaagtggtgtttgatagggggagttttagagcgacc
ggagaatgcgtggatattttccccgcttataatgacgctgaatttatcaggattgaattt
tttggcgatgagatagaaaggattgctgtctttgacgctttagaaaaaaatgaaatcaag
cgcttggattctgtcatgctttatgcggccagtcagtttgccgtagggagtgagaggttg
aatttagccattaaaagcattgaagatgaactcgctttaagattgaaattttttaaagag
caggataaaatgcttgaatacaaccgcctcaaacaacgcaccgagcatgatttagaaatg
attagcgcaaccggtgtgtgtaagggcattgaaaattacgcgcgccattttacaggtaaa
gcccctaatgaaacgcctttttgcttgtttgattatttagggatatttgagcgggagttt
ttagtcattgtggatgaaagccatgtgagtttgccgcagtttggggggatgtatgcaggg
gatatgagcaggaaaagcgttttagtggaatatggttttagattgcctagcgctttagac
aaccgccctttaaaatttgatgaatttatccataaaaattgccagttcctttttgtatcc
gccacgcccaataagctagaattagagctttctcaaaagaatgtcgctgagcaaatcatt
cgccctacagggcttttagaccctaaatttgaagtgcgagacagcgataagcaagtccag
gatttatttgatgaaatcaagttagtggtagctagagatgaaagggtgcttatcaccacg
ctcactaaaaaaatggcagaagaattgtgcaaatattatgccgaatggggcttgaaagcg
cgttacatgcatagtgaaattgatgcgattgaaagaaatcacatcatccgctctttaagg
cttaaagaatttgacattttaatagggatcaatcttttaagagaagggctagatttgcct
gaagtctctttagtagcgatcatggatgcggataaagaagggtttttaaggagtgaaaca
agcctcattcaaaccatgggacgagccgctagaaacgccaatggcaaggttttattatac
gctaaaaaaatcacccaaagcatgcaaaaagcctttgaaattacgagctacaggcgcgct
aagcaagaagagtttaataagcttcatcatatcacccccaaaaccgttactcgcgcttta
gaagaggagttgaaattaagagacgatgaggttaaaatcgctaaagccttaaaaaaagac
aaaatacctaaaagcgaaagggaaaaaatcattaaagaactggataaaaaaatgcgagaa
tgcgcgaaaaatttggattttgaagaagcgatgcgtttgagagatgaaatcgctaaatta
agaacgctttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (16)   
   Pfam (16)   
All databases (23)   

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