KEGG   Helicobacter pylori Shi470: HPSH_01800
Entry
HPSH_01800        CDS       T00742                                 
Name
(GenBank) single-stranded-DNA specific exonuclease
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hps  Helicobacter pylori Shi470
Pathway
hps03410  Base excision repair
hps03430  Mismatch repair
hps03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hps00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    HPSH_01800
   03430 Mismatch repair
    HPSH_01800
   03440 Homologous recombination
    HPSH_01800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hps03400]
    HPSH_01800
DNA repair and recombination proteins [BR:hps03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     HPSH_01800
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     HPSH_01800
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HPSH_01800
SSDB
Motif
Pfam: DHH DHHA1 RecJ_OB GLUCM-like_C Fe-S_biosyn
Other DBs
NCBI-ProteinID: ACD47810
Position
complement(337583..339133)
AA seq 516 aa
MKQKLKAQIKERVASIAYNEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGV
ISSTIMAKFFESLNYKHVRIVIPNRFIDGYGISKKFLEKHHAPLIITVDNGISAFEATRF
CKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFSIAPLINSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVF
EEALKHAMVGEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSGRSSSN
IDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLTLT
LKDIDRELLEIIEMGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDRECIKEAIY
FNTERFLKAGEKVNAIFSVELDECSNEPKMFVKSLL
NT seq 1551 nt   +upstreamnt  +downstreamnt
atgaaacaaaagcttaaagctcaaatcaaagagcgagtggcttctatcgcttataatgaa
aaagggtttcctagcccctttttatttaaagacttgaaaaaagccgcgctcaaaatcata
gaagccatgcgcgcaaacacagagattttagtggtgggcgattatgacgctgacggcgtg
attagctctactatcatggcaaaattctttgaaagcctgaactataagcatgttcgcatt
gtaatccctaatcgcttcattgatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataacgggattagcgcctttgaagccacgcgattt
tgtaaagaaaaaaattacacccttatcatcacagatcaccattgcttacaccatgatgaa
gtcccagacgcttatgcggtgatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgcggggcgttggtggcgttttatttgtgctatggcatccaccagcttttagga
aaagaaaaaagccattctagcgagttgttgtgtttggcgggcgtggcgactattgctgac
atgatgcctttgactttttttaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatccttaggagcgatggggtttttgcgccaaagagaagtttttagaaaacgctct
ttaaaagcgagcgatatttcttttagtatcgcccccttaatcaactccgcagggcgcatg
caagatgcgaaaatggctttagattttttaagcgcgaataattttcaagatggctatttt
ttgtatgaacgcttgaaagcatgcaatatgaagcgtaaaatgatccaacagcaggttttt
gaagaggctcttaagcatgcgatggttggcgaaaaaattatcgtcgcttttaaggatgat
tggcatgagggtgtgcttgggattgtggcttcaaaattagtggaagccactcaaaagcca
agcctggtttttacctttaaagaaggggtgtataaagggagcgggcgcagctcttcaaat
attgatctcattgacgctttgaatggggtttcttctttgttgctcggctatggggggcat
aggcaagcttgcggtttgagcgttggaaaaaacaatatcatctcgctctttgaaacttta
gaaaattttgattttaaaatcctacctttttgtgaaaaagaaccccctttaacgctcaca
ttaaaagacattgatagagagcttttagagattatagaaatgggcgaaccttatgggcaa
gaaaacccagagccgctctttcaagcgcaaaatttagaagtcatagaagaaaaaatcatt
aaagaaagccaccaggttttgcgttttaaggatagagaatgcatcaaagaggctatttat
tttaacactgagcggtttttgaaagcgggcgaaaaggtgaatgcgatttttagcgtggaa
ttagatgagtgttctaatgagcctaaaatgtttgttaaaagtttgttgtag

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