KEGG T00742: HPSH

Helicobacter pylori Shi470: HPSH_04410

Entry

HPSH_04410        CDS       T00742

Symbol

gyrB

Name

(GenBank) DNA gyrase subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

hps Helicobacter pylori Shi470

Brite

KEGG Orthology (KO) [BR:hps00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hps03032]
    HPSH_04410 (gyrB)
   03400 DNA repair and recombination proteins [BR:hps03400]
    HPSH_04410 (gyrB)
Enzymes [BR:hps01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     HPSH_04410 (gyrB)
DNA replication proteins [BR:hps03032]
Prokaryotic type
  DNA Topoisomerases
   HPSH_04410 (gyrB)
DNA repair and recombination proteins [BR:hps03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      HPSH_04410 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c GyrB_hook HATPase_c_3

Other DBs

NCBI-ProteinID:

ACD48317

Position

complement(860900..863221)

AA seq 773 aa
MQNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINIT
LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV
VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV
EFQADILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYEDGLKQFVKDSAKKELLTPIIS
FKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIDGN
IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIHQFLE
ENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLESEIFL
VEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGIQESF
DIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYKKGKTE
IYLKDSVALDHFLIEHGINSVDIEGIGKNDLMNLLKVARHYRYALLELEKRYNLLEILRF
LIETKDALSFDMKILEKSILEKLEGLNYQILRSFATEESLHLHAQTPKGLVEFNLDDNLF
KEVLFEEANYTYQKLMEYNLDFLENKDILAFLEEVENHAKKGANIQRYKGLGEMNPNDLW
ETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEVEPRRAFIQAHAKDVKQLDV

NT seq 2322 nt +upstreamnt +downstreamnt
atgcaaaattaccagagccatagtatcaaggttttaaaaggcttagagggggttaggaaa
cgccctggaatgtatattggcgataccaatgtgggtgggttgcaccacatggtgtatgaa
gtcgtggataacgctgtagatgagagcatggcgggtttttgcgatacgattaatatcact
ttgactgatgagggttcatgcattgtagaagataacgggcgaggcattcctgtagatatt
caccccacggaaaaaatccccgcttgcaccgtggttttaacgattttgcatgcgggaggc
aagtttgataatgatacttataaagtttcaggcggtttgcatggcgtgggcgtttcggtt
gtgaacgctttaagcaaacgcttgattatgaccattaaaaaagagggtcaaatctatcgc
caggagtttgaaaagggtatccccattagcgagcttgaaatcattggcaaaaccaaaagc
gctaaagaaagcggcacaactattgaatttttccctgatgagagcgtgatggaagtcgtt
gaatttcaagcggatattttacaaaaacgcttcaaagaaatggcgtatcttaacgacggc
ttaaaaatttctttcaaagaagaaaaaacccagttgcaagagacttatttctatgaagac
ggcttgaaacaattcgttaaagacagcgctaaaaaggaattgctcacccccattatttcg
tttaaaagcatggatgaagaaacgcgcacttctatagaagtcgctctagcgtatgctgat
gattacaatgaaaacactttaagctttgtgaataacattaaaacttctgagggcggcacg
catgaagcgggctttaaaatgggcttgtctaaggcgattttacaatatattgatggaaac
attaagacaagagaatcccgccccatctctgaagacattaaagagggcttgattgcggtc
gtgagcttgaaaatgagcgagcctttatttgaagggcagactaaatccaaactcggtagt
tcgtatgcgcgcgcgttggtttcaaaattagtctatgataaaatccatcaatttttagaa
gaaaaccctaacgaagccaaaatcattgccaataaagcccttttagccgcaaaagccaga
gaagccagtaagaaagccagagagcttacaaggaaaaaagataatttgagtgtcggcact
ttgcctggaaaattagccgattgccagagtaaagatcctttagagagtgaaattttttta
gtggagggcgatagtgcaggcggtagcgctaaacaagggcgcgatagggttttccaagcg
atcttgcctttaaaaggtaagattttaaatgtggaaaaaagccatttgtcaaaaatccta
aaatcagaagagattaaaaacatgatcacggcttttgggtgtggcattcaagagagtttt
gatatagaaagattgcgctatcataaaatcattatcatgaccgatgctgatgtggatggg
agccatatccaaaccttgctgatgacttttttctatcgttatttgcgcccgctgattgaa
caagggcatgtttatatcgctcaagcccctctttacaaatacaagaaaggcaagacagaa
atctatcttaaagacagcgtggctttggatcatttcttaattgagcatggcatcaattcg
gtggatattgaagggattggcaagaacgatttgatgaatttgttaaaagtggcgcgccat
taccgctacgcgcttttggaattagaaaaacgctacaatttgctagaaattttacgcttt
ttgattgaaactaaggacgccttaagctttgatatgaaaattttagaaaaaagcattttg
gaaaaattagagggcttgaattatcagatcttacgctcttttgctactgaagagagcttg
catttgcacgcgcaaacccctaaaggcttggtggaatttaacctagatgacaacctcttt
aaagaggtgttgtttgaagaagcgaattacacttaccaaaagcttatggagtataattta
gacttcttagaaaataaggatattttggcgtttttagaagaagtggaaaatcatgctaaa
aagggagcgaatatccagcgctataaggggctaggcgagatgaaccccaatgatttgtgg
gaaacgaccatgcataaagaaaaccgcagcttaatcaaactcaaaattgaagatttagaa
aaaaccgatgcagtcttttcgctttgcatgggcgatgaggtagagcctagaagagccttt
atccaagcgcatgctaaagatgtgaagcagctagatgtgtaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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