KEGG T01894: HPCU

Helicobacter pylori Cuz20: HPCU_06380

Entry

HPCU_06380        CDS       T01894

Name

(GenBank) ribonuclease R

K12573

ribonuclease R [EC:3.1.13.1]

Organism

hpu Helicobacter pylori Cuz20

Pathway

hpu03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:hpu00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HPCU_06380
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hpu03019]
    HPCU_06380
   03016 Transfer RNA biogenesis [BR:hpu03016]
    HPCU_06380
Enzymes [BR:hpu01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     HPCU_06380
Messenger RNA biogenesis [BR:hpu03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HPCU_06380
Transfer RNA biogenesis [BR:hpu03016]
Prokaryotic type
  tRNA degradation factors
   HPCU_06380

SSDB

Motif

Pfam:

RNB

Other DBs

NCBI-ProteinID:

ADO04420

Position

complement(1299456..1301390)

AA seq 644 aa
MQGFLRSLFFGVKKIPKPFAPLIEKGVLKEALGFNKERYFLKEGFDIGRIEWAENKAFFI
SLAKNYPKDPLIKNLPPSFKTDALILCKIECSKKRPIAFFKAALLNAEHAMIAYLAKKNH
QIVAIPFKESFKKPILLKHSQRSLLELPRHCVVKIDLKKREISEILGALEDPLIDENLSL
SLFDRIKDFSKDCLDLAQHYAQLKASDFKNRINYSHLPFITIDPKDAKDFDDAIFYDQEK
RVLFVAVADVSEFVPKYSSLDKEARVRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLA
LVYEIPLDDLENARLFQGVIEVRANCTYEEINHFLTTQQSSLDNDLQQSLLGFLEMALKL
KKERLKKGFNFNSFENKLYLNKEGRIEKIETQTESNAHTLIEEAMLLANQSSANLLDKHF
QNKGIYRTHKEPSLEQQKRLYDKLFDYEIMRPKNMGFFPFLEHALKIAKEKKLEREVSRL
IIKSQNLALYSPMQESHFGLGFISYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLE
ETPELCAELNALQKKAALIERDFVKRKFARLALELLEKEFLGVVLEVKDWVVVGLKELIG
LKVLVKTNKVFKSLEKVRVKITHADLVLGQVWGEITERIKEHVS

NT seq 1935 nt +upstreamnt +downstreamnt
atgcaagggtttttaagaagcctgttttttggggttaaaaagatccctaaaccattcgct
cctctaatagaaaagggcgttttaaaagaagcgcttggattcaacaaggagcgctatttt
ttaaaagaaggctttgatataggcagaattgagtgggcagaaaataaggcgtttttcatt
tctttagcgaaaaattaccctaaagaccctttaatcaaaaacttacccccatcttttaaa
acagacgctttgattttatgcaaaatagaatgttctaaaaaacgccccatagcctttttt
aaagccgcgcttttaaatgcagaacatgcgatgatagcttacttggctaaaaaaaatcac
cagattgtggctatcccttttaaagagtcttttaaaaaacccattcttttaaagcacagc
caaagatccttattggaattgcctaggcattgcgtggtaaagatcgatcttaaaaagcgt
gaaatcagcgaaattttaggggctttagaagaccctttaatagatgaaaacctttcttta
agcctttttgacaggattaaggatttttcaaaagattgtttggatttagcccaacattac
gcgcaacttaaagcgagcgattttaaaaataggatcaattattctcacctcccttttatc
accattgatcctaaagacgctaaggattttgacgatgcgattttttatgatcaagaaaaa
agggttttgtttgtggcggttgctgatgtgagcgaatttgtgccgaaatattccagtttg
gataaagaagctagggttaggggctttagcgtgtatttccctaatagcgtgtatcccatg
ctgcctttgagtttatctcaaggggcatgctcactaaaagcgtttgaaaaacgcctggct
ttagtgtatgaaatccctttagatgatttggaaaacgcccgattgtttcaaggcgttatt
gaagttagggctaattgcacctatgaagaaatcaaccattttttaaccacccaacaaagc
tcgttagataacgacttgcaacaaagccttttggggtttttagaaatggctttaaagtta
aaaaaggagcgtttaaaaaaggggtttaatttcaattcgtttgaaaacaagctgtattta
aataaagaagggcgtatagaaaaaattgaaacgcaaacagaaagcaacgcgcacaccctt
atagaagaagccatgctattggccaaccaatctagcgcgaatttattggataagcatttt
caaaataaggggatataccgcacccataaagagccaagtttggagcagcaaaaacgcctc
tacgacaagctttttgattatgagatcatgcgccctaaaaacatgggctttttccctttt
ttagagcatgccttaaagatagccaaagaaaagaagttagaaagagaagtttcgcgcttg
atcattaaatctcaaaatttagccctttatagccccatgcaagaaagccattttggtttg
gggtttattagctatacgcatttcacttcgcccattagacgatacagcgatttagcctta
cacaggcttttaaaagaattgttgtttcatcaagctaaaggctgctcgtatttgttagaa
gaaacgcctgaattgtgcgctgagttgaacgctttacaaaaaaaggccgctttgattgaa
agggattttgtcaaacgcaaattcgcccgcttagctttagaacttttagaaaaagaattt
ttgggcgttgttttggaggttaaagattgggtggtggtggggctaaaagaattaataggg
cttaaagttttagtcaaaacgaacaaggtttttaagtctttagaaaaggtgcgcgttaaa
atcacgcatgcggatttggttttagggcaagtttggggcgaaatcacagaaaggattaaa
gagcatgtatcgtaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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