KEGG   Helicobacter pylori v225d: HPV225_1248
Entry
HPV225_1248       CDS       T01899                                 
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
hpv  Helicobacter pylori v225d
Pathway
hpv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hpv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HPV225_1248
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hpv03019]
    HPV225_1248
   03016 Transfer RNA biogenesis [BR:hpv03016]
    HPV225_1248
Enzymes [BR:hpv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     HPV225_1248
Messenger RNA biogenesis [BR:hpv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     HPV225_1248
Transfer RNA biogenesis [BR:hpv03016]
 Prokaryotic type
  tRNA degradation factors
   HPV225_1248
SSDB
Motif
Pfam: RNase_PH RNase_PH_C KH_1 S1 PNPase S1_2
Other DBs
NCBI-ProteinID: ADI35281
Position
complement(1224943..1227009)
AA seq 688 aa
MDFITITSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEN
DLQVSALNAASAALFLSHIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKE
SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGII
FNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVK
KTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDND
AQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKE
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDIS
GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQAKKAREHILKIMHEAKE
RIVINFSHLPTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGNKE
RVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQNMDR
CQVVLKEGDSIRCRVISFNKGKIALDLA
NT seq 2067 nt   +upstreamnt  +downstreamnt
atggattttatcaccatcacttctagtaacaaaaccgaagagttcgctctcaaacaagtg
gccaaacaagccaccagctctcttatgtatcgcttaggaaaaaccatcattttagcgagc
gtgtgcgtggaaagagagcctgtgagtgaagattttctgcctttagtggtgcagttttta
gaaaaatcttatgcagccggaaagatcccgggcggctttgttaaaagagaaggcagggcg
caagattttgaaatcttaacctctaggcttatagacaggactttacgccctttattccct
aaagactaccgctaccccacacagatcactttaatggttttaagccatgatattgaaaat
gacttgcaagtttctgccttaaacgctgcttcagccgctctctttttatcccatattgct
cccattaaaagcgtgagcgcttgcaggatcgctaggattggtaacgaatttatcattaac
cctaacacaagccttttgaatcaatccagtttggatttgttcgtgtctggcacaaaagag
agtttgaacatgatagaaatgcgctctttggggcaacaattaaacgctttagaagagcct
ttaatgctaaaagctttagaattggctcaaaaaagtttgaaagaaacttgcacgctttat
gaagagatttttacgccccaccaaaacgagctgcttttcaaagagagccaaggaataatt
tttaatgaaaggctgttagatttattaaaaaatcagtattttgatgaaatcatcaaaggc
attgaaagttctgctttgagcgagcgagaaaatgttttcaatgaaattgctagaaaaatc
agtgaagcccactcagaattcagtttagaagaaattgaattgtctttagaaaaagtgaaa
aaaactgagataagacgcatgatcattaaggataaaatccgcccggataagcgcgcgtta
gaagaagtgcggcccattttgatagagagcgatttgctccctatggcacatagctccatt
ttattcactagggggcaaacgcaaagcttagtggtaggggttttaggcacggataatgac
gctcaaacccatgagagtttggagcataaagcccctatcaaagagcgcttcatgtttcat
tataatttccctcctttttgtgtgggcgaagcgagctctattggcgcgacttcaaggcgc
gaattagggcatgggaatttggctaaaagggccttagaaacgagcattaaaaataaagag
caggtgatacgattggtttctgagattttagaaagcaatggttcaagctcaatggcgagc
gtgtgcgcaggctctttagccctttatgcaagcggtgtggaaatttatgatctagtcgct
ggggtggctatgggtatggtgagcgaagggcaagatcacgccattttaagcgatattagc
ggattagaagatgcagaaggcgatatggattttaagattgccgggaatttagaaggcatt
acggccatgcaaatggataccaaaatgagcggtatccaattagagattttataccaagcc
ttactccaagctaaaaaagcacgagagcatattttaaaaatcatgcatgaagcgaaagaa
aggatcgtgatcaatttttcccatttgcccacaacggagatttttaatgtcgcgcccgat
aaaattgtagaaattatcggtcaaggggggcgtgtgatcagagagatagtagaaaagttt
gaggttaaaattgatttgaacaaaccgagcggtgaagtgaaaatcatggggaataaagaa
cgggttttgaaaacgaaggaatttattttaaactacttgcattctttggatcaagaattg
gagcaatacgctattgatgaggtattagaagctcaagtgaagagaatcgtggattttggg
gcgtttttaagcttgcctaaggggggcgaaggcttgttaagaaaacaaaacatggacagg
tgtcaagtggttttaaaagaaggcgatagcatcaggtgtagggtgattagtttcaataag
ggtaaaatcgccctggatttggcttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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