KEGG   Helicobacter pylori Aklavik117: HPAKL117_03700
Entry
HPAKL117_03700    CDS       T02352                                 
Symbol
rpoZ
Name
(GenBank) DNA-directed RNA polymerase subunit omega
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
hpya  Helicobacter pylori Aklavik117
Pathway
hpya03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hpya00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HPAKL117_03700 (rpoZ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hpya03021]
    HPAKL117_03700 (rpoZ)
   03400 DNA repair and recombination proteins [BR:hpya03400]
    HPAKL117_03700 (rpoZ)
Enzymes [BR:hpya01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HPAKL117_03700 (rpoZ)
Transcription machinery [BR:hpya03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HPAKL117_03700 (rpoZ)
DNA repair and recombination proteins [BR:hpya03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HPAKL117_03700 (rpoZ)
SSDB
Motif
Pfam: RNA_pol_Rpb6 DUF2533
Other DBs
NCBI-ProteinID: AFX91142
UniProt: K7YS77
Position
complement(770111..770335)
AA seq 74 aa
MKKERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREI
AEGKIDIDRIDERN
NT seq 225 nt   +upstreamnt  +downstreamnt
ttgaaaaaagagagaacagagagtttagtcgctcaagccttaaaaaatattgggaacgac
cgctacatgctagataatttagttttcgctcgtgtgaagcaattaaacgccggagccaaa
actttagtgaatatggaccctaaacgccataaattagtggatattgccattagagaaatc
gctgaagggaaaattgatatagacaggatagatgaacgaaattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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