KEGG   Helicobacter pylori oki422: HPOKI422_02905
Entry
HPOKI422_02905    CDS       T03726                                 
Name
(GenBank) excinuclease ABC subunit C
  KO
K03703  excinuclease ABC subunit C
Organism
hpyf  Helicobacter pylori oki422
Pathway
hpyf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hpyf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HPOKI422_02905
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hpyf03400]
    HPOKI422_02905
DNA repair and recombination proteins [BR:hpyf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HPOKI422_02905
SSDB
Motif
Pfam: UvrC_RNaseH_dom GIY-YIG UVR HHH_5
Other DBs
NCBI-ProteinID: AHN40344
Position
complement(575764..577548)
AA seq 594 aa
MADLLSSLKNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSICNNEITPNHRASLR
IQMMVKQIAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPI
PLITRKILKQPGVKYFGPFTSGAKDILDSLYELLPLVQKKNCIKDKKACMFYQIERCKAP
CENKITKEEYLKIAKECLEMIENKDRLIKELELKMERLSNNLRFEEALIYRDRIAKIQKI
APFTCMDLAKLYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQ
AIINHYQSHLPLMPEQILLNACSNEALKELQEFISHQYSKKIALSIPKKGDKLALIEIAM
KNAQEIFSQEKTSNEDLILEEARSLFNLECVPYRVEIFDTSHHSNSQCVGGMVVYENNAF
QKNSYRRYHLKGSNEYTQMSELLTRRALDFAKEPPPNLWVIDGGRAQLNIALEILKSSGS
FVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLLPSDKRLQWVQKLRDESHRYAINF
HRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASDQEKNAVLKKRI
NT seq 1785 nt   +upstreamnt  +downstreamnt
atggctgatttattgtccagtttgaaaaaccttcctaatagcagtggcgtgtatcaatat
tttgataaaaaccgccaattgctctatatcggtaaagcgaaaaatttaaaaaagcgcatc
aaaagctatttttctatctgcaataatgaaatcacgcccaaccatcgcgcaagcttacga
atccaaatgatggtcaaacaaatcgcttttttagaaacgattttagtggaaaacgagcaa
gacgctttgattttggaaaattctttaatcaagcagctcaagcctaaatacaatattctt
ttaagagatgataaaacttacccttatatttacatggatttttccactgatttccctatc
cctttaatcacacgaaaaattttaaaacagcctggcgttaaatattttggcccttttacg
agcggggctaaggatattttggacagcttgtatgagttgctccctttagttcaaaagaaa
aattgcatcaaggataaaaaggcatgcatgttttatcaaatagagcgttgcaaagcccca
tgcgagaataaaatcaccaaagaagagtatttaaaaatcgctaaagaatgtttagaaatg
attgaaaataaagacaggctcatcaaagagcttgaattgaaaatggagcgcctttccaat
aacttgcgttttgaagaagccctaatttacagggacaggattgcaaaaatccaaaaaatc
gcccctttcacttgcatggatttagccaaactctatgatttggacatttttgctttttat
ggcgcgagcaataaggcggtgttagtgaaaatgtttatgcgtgggggtaaaatcatttct
tcagcgtttgaaaaaatccactcccttaatgggtttgacactgatgaggcgatgaaacaa
gccattatcaaccattaccaatcgcatttgcctttgatgcctgaacaaattctattaaac
gcttgttctaatgaagcgcttaaagaattgcaagagtttatctctcatcaatactctaaa
aaaatcgctcttagcattcctaaaaagggcgataagctcgctttaatagaaatcgctatg
aaaaacgctcaagagatttttagccaagaaaaaacctctaatgaagatctgattttagaa
gaagcgcgatcgcttttcaatttagagtgcgtgccttatagggtggaaatctttgacaca
agccaccattcaaacagccaatgcgtggggggaatggtcgtgtatgaaaacaatgcattc
caaaaaaactcttaccggcgctaccatttaaaaggctctaacgaatacactcaaatgagc
gaattgctcaccagaagagctttagactttgccaaagagccaccgcctaatttgtgggta
atagatggagggagggcgcaattaaacatcgctttagaaattttaaaaagcagcgggagt
tttgtagaagtgatcgctatttctaaagaaaaaagggattctaaggcttatcgctctaaa
gggggcgctaaagacattatccatacgcctagcgatacttttaaattgctccctagcgac
aaacgcttgcagtgggtgcaaaaattgcgcgatgaaagccaccggtatgcgataaacttc
catagatccactaaacttaaaaacatgaaacaaatcgctcttttaaaagaaaagggtata
ggagaagccagcgtgaaaaaattattggattattttgggagttttgaagcgatagaaaaa
gcgagcgatcaggaaaaaaacgccgttttaaaaaaacgaatctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (11)   

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