KEGG   Helicobacter pylori oki422: HPOKI422_03450
Entry
HPOKI422_03450    CDS       T03726                                 
Name
(GenBank) DNA polymerase III subunit gamma/tau
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
hpyf  Helicobacter pylori oki422
Pathway
hpyf03030  DNA replication
hpyf03430  Mismatch repair
hpyf03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hpyf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HPOKI422_03450
   03430 Mismatch repair
    HPOKI422_03450
   03440 Homologous recombination
    HPOKI422_03450
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hpyf03032]
    HPOKI422_03450
   03400 DNA repair and recombination proteins [BR:hpyf03400]
    HPOKI422_03450
Enzymes [BR:hpyf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HPOKI422_03450
DNA replication proteins [BR:hpyf03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     HPOKI422_03450
DNA repair and recombination proteins [BR:hpyf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     HPOKI422_03450
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA AAA_22 RuvB_N AAA_14 AAA_5 DNA_pol3_gamma3 Atrophin-1 AAA_30 DEAD AAA_assoc_2 AAA_19 MukB
Other DBs
NCBI-ProteinID: AHN40444
Position
678657..680441
AA seq 594 aa
MQVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARAL
MCEEGPKAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKI
FIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENS
VISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLG
AIDRSVLEDFFQSLINQDEARLQERYAILENYETESVLEEMMLFLKAKLLSPDSYSILLI
ERFFKIIMSSLSLLKEGANASFVLLLLKMKFKEALKLKALDDAILELEQSKESVLKPLNQ
NANAPKQEPKSAEKIEKPEKRENTETQQTPMLSAKDRIFHNLFKQVQTLVYERNYGLGAV
FEKNIRFIDFDSQTKTLTWESLATDKDKELLRERFKIVKSIVDGVFGKGENIKIALKHHL
ENKSAREETKEIKDFKISSLREKILPKPTTETTAETKEKEVQKNEIKEKEIKEKEIKEKE
IKEKEIKEKEIKEKEIKEIQPKEAPTALQEFMANHSNLIEEIKSEFEIKSVELL
NT seq 1785 nt   +upstreamnt  +downstreamnt
atgcaagttttagcgttaaaataccgccccaaacattttagcgagttagtcggtcaagag
agcgtggctaaaacgctttctttagccctagacaaccagcgtttggctaacgcttattta
ttcagcgggttaagaggttcgggtaaaaccagctcttctaggatttttgctagggctttg
atgtgtgaagaagggccaaaggctgtgccttgcgatacttgcatccaatgccagagcgct
ttaaacaaccaccacatagatattatagaaatggatggggcgtctaatagggggattgat
gatgtccgtaatctcatagagcaaacgcgctacaaaccaagctttgggcgctataaaatc
tttatcattgatgaagtgcatatgttcaccaccgaagcgtttaacgcgcttttaaagact
ttagaagagcctcctagccatgtgaaattccttttagcgacaacggacgccttgaaattg
cccgctaccatactcagccgcacccagcatttccggtttaaaaaaatccctgaaaattcc
gttatttctcatttaaaaactattttagaaaaagaacaagtgagctatgaaacaagcgcg
ttagaaaaactggctcacagcgggcaagggagcttgagggatacgatcactcttttagaa
caagccatcaattattgcgataacgctatcacagaaagcaaagtggctgaaatgttagga
gcgattgacaggagtgttttagaagatttttttcaaagcctaatcaaccaagatgaagcg
cgattgcaagagcgttatgccattttagaaaattatgaaaccgagagcgttttagaagaa
atgatgctttttttgaaagcgaaattattaagccctgattcgtattccatccttttgata
gagcgcttttttaaaatcattatgagcagtttgagccttttgaaagaaggggcaaatgcc
agttttgtgctgttgttattgaaaatgaaattcaaagaagctttgaaactcaaagcccta
gatgatgcgattttggaattagagcaaagtaaagaaagtgttttaaaacccttaaaccaa
aacgctaacgctcctaaacaagaacccaaaagcgcagaaaaaatagaaaagccagaaaaa
agagaaaacacagaaacccagcaaactcccatgctttcagctaaagatcgcatttttcac
aaccttttcaaacaagttcaaacattggtttatgagcgcaattatgggttaggggcggtg
tttgaaaaaaatatccgtttcattgattttgacagccagactaaaaccttgacttgggag
tctttagccactgataaagataaagagcttttaagagaacgatttaaaatcgtgaaaagt
atcgttgatggggtttttggcaagggcgaaaatatcaaaatcgctttaaaacatcatttg
gaaaataaaagtgctagagaagaaactaaagagattaaggattttaaaatttcttcttta
agggaaaaaatcttacccaaaccaaccaccgaaaccacggctgaaactaaagaaaaagag
gttcaaaaaaacgagattaaagaaaaagaaattaaagaaaaagagattaaagaaaaagag
attaaagaaaaagagattaaagaaaaagagattaaagaaaaagagattaaagaaatccaa
cccaaagaagcccctacagccttgcaagaattcatggctaaccattctaatctcattgaa
gagattaagagcgagtttgaaatcaaaagcgtggaattgttatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (13)   
   Pfam (13)   
All databases (25)   

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