KEGG   Helicobacter pylori oki828: HPOKI828_01820
Entry
HPOKI828_01820    CDS       T03728                                 
Name
(GenBank) single-stranded DNA exonuclease
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hpyh  Helicobacter pylori oki828
Pathway
hpyh03410  Base excision repair
hpyh03430  Mismatch repair
hpyh03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hpyh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    HPOKI828_01820
   03430 Mismatch repair
    HPOKI828_01820
   03440 Homologous recombination
    HPOKI828_01820
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hpyh03400]
    HPOKI828_01820
DNA repair and recombination proteins [BR:hpyh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     HPOKI828_01820
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     HPOKI828_01820
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HPOKI828_01820
SSDB
Motif
Pfam: DHH DHHA1 RecJ_OB GLUCM-like_C Fe-S_biosyn
Other DBs
NCBI-ProteinID: AHN43056
Position
complement(342491..344041)
AA seq 516 aa
MKQKLKAQIKERVASIAYNEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGV
ISSTIMAKFFESLNYKHVRIVIPNRFIDGYGISKKFLEKHHAPLIITVDNGISAFEAARF
CKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFSIAPLINSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVF
EEAFKHAMVGEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSGRSSSN
IDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLTLT
LKDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIINESHQVLRFKDKECIKEAIY
FNTDRFLKAGEKVSAIFSVELDEYSNEPKMFVKSLL
NT seq 1551 nt   +upstreamnt  +downstreamnt
atgaaacaaaagcttaaagctcaaatcaaagagcgagtggcttctatcgcttataatgaa
aaagggtttcctagcccctttttattcaaagacttgaaaaaagccgcgctcaaaatcata
gaagccatgcgtgcaaacacagaaattttagtggtgggcgattatgacgctgacggcgtg
attagctctactatcatggcaaaattctttgaaagcctgaattataagcatgttcgcatt
gtaatccctaatcgcttcattgatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataacgggattagtgcctttgaagccgcgcgattt
tgcaaagaaaaaaattacacccttatcatcacagatcaccattgcttacaccatgatgaa
gtcccagacgcttatgcggtgatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgcggggcgttggtggcgttttatttgtgctatggcatccaccagcttctagga
aaagaaaaaagccattctagcgagttgctgtgcttagcgggtgtcgccacgatcgcagac
atgatgcctttgactttttttaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatccttaggggcgatggggtttttgcgccaaagagaagtttttagaaaacgctct
ttaaaagcgagcgatatttcttttagtatcgcccccttaatcaactccgcagggcgcatg
caagatgcgaaaatggctttagattttttaagcgcgaataattttcaagatggctatttt
ttgtatgaacgcttgaaagcatgcaatatgaagcgtaaaatgatccaacaacaggttttt
gaagaggcttttaagcatgcgatggttggagaaaaaattatcgtcgcttttaaggatgat
tggcatgagggcgtgttagggattgtggcttcaaaattagtggaagccactcaaaagcca
agcctggtttttacctttaaagaaggggtgtataaagggagtgggcgtagctcttcaaat
attgacttgattgatgccttgaatggggtttcttctttgttgctcggctatggggggcat
aggcaagcttgcgggttgagcgttggaaaaaacaatatcatctcgctctttgaaacttta
gaaaattttgattttaagatcctacctttttgtgaaaaagaaccccctttaacgctcacg
ttaaaagacattgacagagagcttttagagattatagaagcgggcgaaccttatgggcaa
gaaaacccagagccgctctttcaagcgcaaaatttagaagtcatagaagaaaaaatcatt
aacgaaagccaccaggttttgcgttttaaggataaagaatgcatcaaagaggctatttat
tttaacactgatcggtttttgaaagcgggcgaaaaggtgagtgcgatttttagcgtggaa
ttagatgagtattctaatgagcctaaaatgtttgttaaaagtttgttgtag

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