KEGG   Helicobacter pylori oki828: HPOKI828_04175
Entry
HPOKI828_04175    CDS       T03728                                 
Name
(GenBank) excinuclease ABC subunit C
  KO
K03703  excinuclease ABC subunit C
Organism
hpyh  Helicobacter pylori oki828
Pathway
hpyh03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hpyh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HPOKI828_04175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hpyh03400]
    HPOKI828_04175
DNA repair and recombination proteins [BR:hpyh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HPOKI828_04175
SSDB
Motif
Pfam: UvrC_RNaseH_dom GIY-YIG UVR HHH_5 HHH_2
Other DBs
NCBI-ProteinID: AHN43472
Position
836437..838221
AA seq 594 aa
MADLLSSLKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSVRNNEITPNYRASLR
IQMMVKQIAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPI
PLITRKILKQPGVKYFGPFTSGAKDILDSLYELLPLVQKKNCIKDKKACMFYQIERCKAP
CENKITKEEYLKIAKECLEMIENKDKLIKELELKMERLSNNLRFEEALIYRDRIAKIQKI
APFTCMDLAKLYDLDIFAFYSGSHKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQ
AIINHYQSHLPLMPEQILLNACSNETLKELQDFISHQYSKKIALSIPKKGDKLALIEIAM
KNAQEIFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENHEF
QKNSYRRYHLKGSNEYTQMSELLTRRALDFAKEPPPNLWVIDGGRAQLNIALEILKSSGS
FVEVIAISKEKRNSKAYRSKGGAKDIIHTASDTFKLLPSDKRLQWVQKLRDESHRYAINF
HRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASEQEKNAVLKKRI
NT seq 1785 nt   +upstreamnt  +downstreamnt
atggctgatttattgtctagtttgaaaaacctttctcatagcagcggcgtgtatcaatat
tttgataaaaaccgccaattactctatatcggtaaggcgaaaaatttaaaaaagcgcatc
aaaagctatttttctgtccgcaataatgaaatcacgcccaattatcgcgcaagcttacgc
atccaaatgatggtcaaacagatcgcttttttagaaaccattttagtagaaaacgagcaa
gacgctttgattttagaaaattctttaatcaagcagctcaagcccaaatacaacattctt
ttaagagacgataaaacttacccttatatttatatggatttttccactgatttccctatc
cctttaatcacacgaaaaattttaaaacagcctggcgttaaatattttggcccttttacg
agcggggctaaagatattttagacagcttgtatgaattgctcccgttagttcaaaagaaa
aattgcatcaaagataaaaaggcatgcatgttttatcaaatagagcgttgtaaagcccca
tgcgagaataaaatcaccaaagaagagtatttgaaaatcgctaaagaatgtttagaaatg
attgaaaataaagacaaactcatcaaagagcttgaattaaaaatggagcgcctttctaat
aacttgcgttttgaagaagccctcatttatagggataggattgcaaaaatccaaaaaatc
gcccctttcacttgcatggatttagccaaactctatgatttggatatttttgctttttat
agtgggagccataaggcggtgttggtgaaaatgtttatgcgtgggggtaaaatcatttct
tcagcgtttgaaaaaatccactctctcaatgggtttgacactgatgaagcgatgaagcaa
gccattatcaatcattaccaatcgcatttgcctttgatgcctgaacagattttattgaac
gcttgctctaatgaaacgcttaaagaattgcaagattttatctctcaccaatactctaaa
aaaatcgctcttagtattcctaaaaaaggcgataagctcgctttaatagaaatcgctatg
aaaaacgctcaagagatttttagccaggaaaaaacctctaatgaagatctgattttagaa
gaagcgcgatcgctctttaaattagagtgcatgccttatagggtggaaatttttgacaca
agccaccatgccaacagccaatgcgtggggggaatggtcgtgtatgaaaatcatgaattt
caaaaaaactcctatcggcgctaccatttaaaaggctctaatgaatacactcaaatgagc
gaattgctcaccagaagggctttagatttcgccaaagagccgccgcctaatttgtgggtg
atcgatggagggagggcgcaattaaacattgctttagaaattttaaaaagcagcgggagt
tttgtagaagtgatcgctatttctaaagaaaaaaggaattctaaagcttatcgctctaaa
gggggcgctaaagacattatccacaccgctagcgatacttttaaattgctccctagcgac
aagcgcttgcaatgggtgcaaaaattgcgcgatgaaagccaccggtatgcgataaacttc
catagatccactaaactcaaaaacatgaaacaaatcgctcttttaaaagaaaagggtata
ggagaagccagcgtgaaaaaattgttggattattttgggagttttgaagcgatagaaaaa
gcgagcgagcaagaaaaaaacgctgttttaaaaaaacgaatctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (12)   

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